BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC33ZD11RM1.SCF screened BAC_end
         (909 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig333                                                          373   e-103

>3x_Contig333 
          Length = 1390

 Score =  373 bits (188), Expect = e-103
 Identities = 221/232 (95%)
 Strand = Plus / Minus

                                                                       
Query: 49  cagtgagaatttcaaaattgctaatcccactctcaatactccactcctcaacgaggagaa 108
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 cagtgagaatttcaaaattgctaatcccactctcaatactccactcctcaacgaggagaa 181

                                                                       
Query: 109 tggcaatcttactgtaggtgtggaccatctacagaatggccttccagaccctctcagtat 168
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 tggcaatcttactgtaggtgtggaccatctacagaatggccttccagaccctctcagtat 121

                                                                       
Query: 169 caatatgaaaaatgaacaggctcatcaacttgaagatgagatgaacagattcttgacacc 228
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 120 caatatgaaaaatgaacaggctcatctacttgaagatgagatgaacagattcttgacacc 61

                                                               
Query: 229 cagcagtactaattctcagaatttgagtgtaaaacgtgaatcacctaagagc 280
           |||| ||||| |||||| |  |||||||||   |||||| || |||||||||
Sbjct: 60  cagctgtacttattctctgtttttgagtgttttacgtgattctcctaagagc 9


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6665
Number of Sequences: 1807
Number of extensions: 6665
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 909
length of database: 10,358,551
effective HSP length: 16
effective length of query: 893
effective length of database: 10,329,639
effective search space: 9224367627
effective search space used: 9224367627
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)