BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZD12FM1.SCF screened BAC_end
(976 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1805 1544 0.0
>3x_Contig1805
Length = 19369
Score = 1544 bits (779), Expect = 0.0
Identities = 865/888 (97%), Gaps = 5/888 (0%)
Strand = Plus / Minus
Query: 91 ccagaacgaagattgtcagttaacttacatctgtaacatttccaacgcgtgttttcattg 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3311 ccagaacgaagattgtcagttaacttacatctgtaacatttccaacgcgtgttttcattg 3252
Query: 151 catgttatcggattcgttatcaatgcattcaaacatatgccacagtcaagtgtcagcttc 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3251 catgttatcggattcgttatcaatgcattcaaacatatgccacagtcaagtgtcagcttc 3192
Query: 211 tacaggtttgagagaacattgtgaacgcatggtcgtttgcaccacagtttatagaattgt 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3191 tacaggtttgagagaacattgtgaacgcatggtcgtttgcaccacagtttatagaattgt 3132
Query: 271 tcatgtctacgtgtgtataatgtcggaaggatttcctattggcctctgaaaaccagtttc 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3131 tcatgtctacgtgtgtataatgtcggaaggatttcctattggcctctgaaaaccagtttc 3072
Query: 331 actttccgttgatttgtttctaaacgttttccagaaaagagacaaataaaggctgaattg 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3071 actttccgttgatttgtttctaaacgttttccagaaaagagacaaataaaggctgaattg 3012
Query: 391 cgatgcatgcctgttctggtatctgatagggatccataaaagctgtgataacttgtttca 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3011 cgatgcatgcctgttctggtatctgatagggatccataaaagctgtgataacttgtttca 2952
Query: 451 aagcacatttgtaaagcaatttccaggctcaagacaaacggtccatcattcgaacttcag 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2951 aagcacatttgtaaagcaatttccaggctcaagacaaacggtccatcattcgaacttcag 2892
Query: 511 ctctatatagtttcatgggattgggaagagggtgtttctagtgaatagtttaagagagta 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2891 ctctatatagtttcatgggattgggaagagggtgtttctagtgaatagtttaagagagta 2832
Query: 571 cgaatctggaacagtaacatcaaaacggtaagctcgcctggaaatatactacaggcggtt 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2831 cgaatctggaacagtaacatcaaaacggtaagctcgcctggaaatatactacaggcggtt 2772
Query: 631 tctttacgattcgtgaaactgtctacgaactcagcgtttggtggctggttgaacagaaaa 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2771 tctttacgattcgtgaaactgtctacgaactcagcgtttggtggctggttgaacagaaaa 2712
Query: 691 aaacaccgatagcataataacttagttgaaaattgctttatcatcctaacgagtacctng 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2711 aaacaccgatagcataataacttagttgaaaattgctttatcatcctaacgagtacctga 2652
Query: 751 aaatccaag-aaagtagtaacaacctcatcattccttatttcatgcgcattcataccatt 809
||||||||| |||||||||||||||||||||||||||||| ||| |||| ||||||||||
Sbjct: 2651 aaatccaagaaaagtagtaacaacctcatcattccttattccattcgcaatcataccatt 2592
Query: 810 ttgattttc-aggattaaaaatac-aaatggacatgacgggcccagacgaataactggtc 867
||||||||| || || |||||||| ||||||||||||||| || ||||||| ||||||||
Sbjct: 2591 ttgattttcaagaataaaaaatacaaaatggacatgacggcccaagacgaaaaactggtc 2532
Query: 868 cacgaggaacaagtttaacattgttcaataggcacttattnccttttnctgctagtaaca 927
|||||||||||||| ||||| ||||||||| ||||||||| |||||| ||||||||| ||
Sbjct: 2531 cacgaggaacaagtataacaatgttcaata-gcacttatttccttttcctgctagtacca 2473
Query: 928 agttcttacatgatgaccacaggacaatgctttacttttaatgatcga 975
|||||| |||||| |||||||| |||||||||||| ||||||||||||
Sbjct: 2472 agttctcacatgaagaccacagaacaatgctttac-tttaatgatcga 2426
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5938
Number of Sequences: 1807
Number of extensions: 5938
Number of successful extensions: 31
Number of sequences better than 1.0e-20: 1
length of query: 976
length of database: 10,358,551
effective HSP length: 16
effective length of query: 960
effective length of database: 10,329,639
effective search space: 9916453440
effective search space used: 9916453440
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)