BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZE01FM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig342 1404 0.0
>3x_Contig342
Length = 2225
Score = 1404 bits (708), Expect = 0.0
Identities = 769/786 (97%), Gaps = 4/786 (0%)
Strand = Plus / Plus
Query: 86 cgttgggtcaatgttttcatgatgttcattggaaaacgttgaccctcgttagaaattgcg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1415 cgttgggtcaatgttttcatgatgttcattggaaaacgttgaccctcgttagaaattgcg 1474
Query: 146 atcatattatacggaaagcagggtaacgatacatacacagacgcatatagtgagtccaca 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1475 atcatattatacggaaagcagggtaacgatacatacacagacgcatatagtgagtccaca 1534
Query: 206 ctatcacgtgattcatattgctaatatatatgcataaatattcagtacaactgagatatc 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1535 ctatcacgtgattcatattgctaatatatatgcataaatattcagtacaactgagatatc 1594
Query: 266 acctattctatcatgcgcagtgaactgtttacccgatgggtagtacttgtcttaaacagg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1595 acctattctatcatgcgcagtgaactgtttacccgatgggtagtacttgtcttaaacagg 1654
Query: 326 aggcgggatattgtttgtttggaacaatttctcactggactgttgtaattgtttccagat 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1655 aggcgggatattgtttgtttggaacaatttctcactggactgttgtaattgtttccagat 1714
Query: 386 gttttcgtacttatctgtcttagatcccagcgtacgttggaaatacccttgtagtagtag 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1715 gttttcgtacttatctgtcttagatcccagcgtacgttggaaatacccttgtagtagtag 1774
Query: 446 cgttatttccgctagacaatcaagtgattcggccatgatattcaagtttttatctgtctt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1775 cgttatttccgctagacaatcaagtgattcggccatgatattcaagtttttatctgtctt 1834
Query: 506 tgtagatagtctgtctgtcagtgatgatgatatagattctattgcctttgtattgaagaa 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1835 tgtagatagtctgtctgtcagtgatgatgatatagattctattgcctttgtattgaagaa 1894
Query: 566 tttcaagacatcggacaattgacgttcgcaatgtcttgcatactgtgatgggaagtttga 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1895 tttcaagacatcggacaattgacgttcgcaatgtcttgcatactgtgatgggaagtttga 1954
Query: 626 ggcgagtaccaataaagttttgatcattttgatggcaaggattagagcctcgcttgccac 685
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1955 ggcgagtaacaataaagttttgatcattttgatggcaaggattagagcctcgcttgccac 2014
Query: 686 gaatgtcttatcacctaagaaacacgga-tttntgtgaccggtagaggattgcttctcat 744
|||||||||||||||||||| | ||||| ||| |||||||||||||||||||||||||||
Sbjct: 2015 gaatgtcttatcacctaagaca-acggattttttgtgaccggtagaggattgcttctcat 2073
Query: 745 cctttgtttcgtctaatggagaagggttgttcaactcgatgaatcgtgtccaatttgacg 804
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 2074 cctttgtttcgtctaatggagaaggtttgttcaactcgatgaatcgtgtccaatttgacg 2133
Query: 805 gatcaatgtcaatacacgatacaatatcattgacattcctttgcaattcgggctcgacga 864
| |||||||||||||||| |||| | | | || | | |||||||||||||||||||||
Sbjct: 2134 gttcaatgtcaatacacgctacatttccttggaaa--cttttgcaattcgggctcgacga 2191
Query: 865 tgaatg 870
||||||
Sbjct: 2192 tgaatg 2197
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6182
Number of Sequences: 1807
Number of extensions: 6182
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)