BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZE01RM1.SCF screened BAC_end
(888 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1602 1427 0.0
>3x_Contig1602
Length = 12694
Score = 1427 bits (720), Expect = 0.0
Identities = 779/791 (98%), Gaps = 6/791 (0%)
Strand = Plus / Minus
Query: 42 agagagttcttgcagcagtagccaacaagccattcttgattgatgcctgagaaacgtcca 101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8687 agagagttcttgcagcagtagccaacaagccattcttgattgatgcctgagaaacgtcca 8628
Query: 102 aaatgaaagcgtaagtggatggtggtggtggtctgacagcgtattctttatgagcaacga 161
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 8627 aaatgaaagcgtaagtggatggtggtggtggtctgacagcgtattctttaggagcaacga 8568
Query: 162 aatccacaacagaatggttgaattcgggtctctcgtaacggttaccattcatatcaattg 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8567 aatccacaacagaatggttgaattcgggtctctcgtaacggttaccattcatatcaattg 8508
Query: 222 cttgagggaagttgttcgccaagttacagaagttacatctccaacgtaaaccattctcga 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8507 cttgagggaagttgttcgccaagttacagaagttacatctccaacgtaaaccattctcga 8448
Query: 282 ttacttgtacgaaggggttcaagtaggcacgacaacgtctacaacgaaccacaacaccgt 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8447 ttacttgtacgaaggggttcaagtaggcacgacaacgtctacaacgaaccacaacaccgt 8388
Query: 342 cttcgctagttggcactggacattcagagtcggttaacttagtgtatggtctgataacca 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8387 cttcgctagttggcactggacattcagagtcggttaacttagtgtatggtctgataacca 8328
Query: 402 tagctaatggtagtttcgattttttcagtaaagaattgttttttggaacggcgttcaaag 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8327 tagctaatggtagtttcgattttttcagtaaagaattgttttttggaacggcgttcaaag 8268
Query: 462 tgcaccttaaatggtcagaacaattgttaactgtatcgttaggaacaatcatcttctctg 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8267 tgcaccttaaatggtcagaacaattgttaactgtatcgttaggaacaatcatcttctctg 8208
Query: 522 gagggagcatcaacggtggtggaggcaaagacaagtcagtgattggaggatgcaattctt 581
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 8207 gagggagcatcaacggtggtggaggcaaagacaagtcagtgattggaggaggcaattctt 8148
Query: 582 ggaacaaatcaactgggtacaattgattcattggtttacccacagccattcctactcctg 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8147 ggaacaaatcaactgggtacaattgattcattggtttacccacagccattcctactcctg 8088
Query: 642 gttgttgatattgtggttgctgctgctgttgtccgtacgtttgcccatacngctgttgca 701
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 8087 gttgttgatattgtggttgctgctgctgttgtccgtacgtttgcccatacggctgttgca 8028
Query: 702 ttggctgctgatactgctgctgaacacccggatatg-tattcgcgccgtagccactgttc 760
|||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||
Sbjct: 8027 ttggctgctgatactgctgctgaaca-ccggatatgttatcggcgccgtagccactgttc 7969
Query: 761 attggcctggccatattgaggagcccca-cgtatgggtggttgttgcacccggggttcca 819
||||| |||||||||||||||||||||| ||||| ||||||||||||| |||||||||||
Sbjct: 7968 attgg-ctggccatattgaggagccccaccgtat-ggtggttgttgca-ccggggttcca 7912
Query: 820 ccttgctggaa 830
||||||||||
Sbjct: 7911 gcttgctggaa 7901
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5796
Number of Sequences: 1807
Number of extensions: 5796
Number of successful extensions: 74
Number of sequences better than 1.0e-20: 1
length of query: 888
length of database: 10,358,551
effective HSP length: 16
effective length of query: 872
effective length of database: 10,329,639
effective search space: 9007445208
effective search space used: 9007445208
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)