BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZE02FM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1615 1600 0.0
>3x_Contig1615
Length = 14844
Score = 1600 bits (807), Expect = 0.0
Identities = 828/836 (99%)
Strand = Plus / Plus
Query: 89 gatctgtgttttgtctgccgttcttcagtataagtactaattgactcttcctgtcatatc 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8057 gatctgtgttttgtctgccgttcttcagtataagtactaattgactcttcctgtcatatc 8116
Query: 149 caagtaatgatatcttaccagtatcattttcattggcaacggaggtggctgtttctttta 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8117 caagtaatgatatcttaccagtatcattttcattggcaacggaggtggctgtttctttta 8176
Query: 209 gatttgcataatcagccaatccgaactgccttctccatagtaacgtgttatgcaaccttc 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8177 gatttgcataatcagccaatccgaactgccttctccatagtaacgtgttatgcaaccttc 8236
Query: 269 taatagtttgttcagcattccaagcggttgccctcagatatctcatgatacactccctcg 328
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 8237 taatagtttgttcagcattccaagcggttgccctcagatatctcaggatacactccctcg 8296
Query: 329 aaagccagaatttctcccagtctcctaacgttgaatagttatttgagtcctgtagatctt 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8297 aaagccagaatttctcccagtctcctaacgttgaatagttatttgagtcctgtagatctt 8356
Query: 389 ccgcatgtccatttacaggcaaacgcaactgcggatcactgaagtgttgcagtacagcat 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8357 ccgcatgtccatttacaggcaaacgcaactgcggatcactgaagtgttgcagtacagcat 8416
Query: 449 ggtatatcacttgttgctcattgtctaactctggttgtcgatgcggttttgtatatcgca 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8417 ggtatatcacttgttgctcattgtctaactctggttgtcgatgcggttttgtatatcgca 8476
Query: 509 gtggtggatcagaaatgaacgtatcacatggaattagatctgcaggttgtctgattaggt 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8477 gtggtggatcagaaatgaacgtatcacatggaattagatctgcaggttgtctgattaggt 8536
Query: 569 catttccctttcgctggaataacctcattgtattgtttatgtatctgtcaagttgaatgt 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8537 catttccctttcgctggaataacctcattgtattgtttatgtatctgtcaagttgaatgt 8596
Query: 629 accagatactagatcttgaaaagcacgggcaacagaaccaacagcttattgaactatttt 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8597 accagatactagatcttgaaaagcacgggcaacagaaccaacagcttattgaactatttt 8656
Query: 689 taaatgatgatttaattataccttatttccctcatggcttccatgtcttacattaaatga 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8657 taaatgatgatttaattataccttatttccctcatggcttccatgtcttacattaaatga 8716
Query: 749 aaaacaattgaattgggcttataaaaaccttcagatactcttaacagaagcaccanaata 808
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 8717 aaaacaattgaattgggcttataaaaaccttcagatactcttaacagaagcaacaaaata 8776
Query: 809 gtaatagaatatacttactctacatgatgatanggttatcggatgaattatatatattac 868
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 8777 gtaatagaatatacttactctacatgatgatagggttatcggatgaattatatataatac 8836
Query: 869 tacctaagctagggtctagttcaaccttntttttgaaagataaatgctcgaattcc 924
|||||||||||||||||||||||||||| | ||||||||| |||||||||||||||
Sbjct: 8837 tacctaagctagggtctagttcaaccttttctttgaaagagaaatgctcgaattcc 8892
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5729
Number of Sequences: 1807
Number of extensions: 5729
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)