BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC33ZE02RM1.SCF screened BAC_end
         (926 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1441                                                        1530   0.0  

>3x_Contig1441 
          Length = 8574

 Score = 1530 bits (772), Expect = 0.0
 Identities = 858/879 (97%), Gaps = 6/879 (0%)
 Strand = Plus / Plus

                                                                        
Query: 47   ttactgatggtttacgaaatgaagaaataggagtaggaacataaaggcgtatcaatctcc 106
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 2402 ttactgatggtttacgaaaagaagaaataggagtaggaacataaaggcgtatcaatctcc 2461

                                                                        
Query: 107  gttagttcaccaagatatccatttgaaaagatgatttcgttaacccttcctacagatatt 166
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2462 gttagttcaccaagatatccatttgaaaagatgatttcgttaacccttcctacagatatt 2521

                                                                        
Query: 167  cctaatgtttctgttctagccacggaaccttctactaaccagctggaacctgtacgacat 226
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2522 cctaatgtttctgttctagccacggaaccttctactaaccagctggaacctgtacgacat 2581

                                                                        
Query: 227  aaagttaaacatgcttgtagcagctgtaaggaaagaaaagttagatgtgatggtcagtct 286
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2582 aaagttaaacatgcttgtagcagctgtaaggaaagaaaagttagatgtgatggtcagtct 2641

                                                                        
Query: 287  ccttgtgctagttgtataaacgcaagggtgaaatgtgaatacgttatgaacatgaagcca 346
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2642 ccttgtgctagttgtataaacgcaagggtgaaatgtgaatacgttatgaacatgaagcca 2701

                                                                        
Query: 347  ttaaagaagaaacgcaaagttagttttataagatccaatttgtctaaaaatgaacttaaa 406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2702 ttaaagaagaaacgcaaagttagttttataagatccaatttgtctaaaaatgaacttaaa 2761

                                                                        
Query: 407  ggtggaagttctgtgattagttctcaaaatgcacaaggcgttgattataagaaagtcttt 466
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2762 ggtggaagttctgtgattagttctcaaaatgcacaaggcgttgattataagaaagtcttt 2821

                                                                        
Query: 467  cattctttgttcccggacgttgatttatctcaaagtaacctatgtaccgagtcattgata 526
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2822 cattctttgttcccggacgttgatttatctcaaagtaacctatgtaccgagtcattgata 2881

                                                                        
Query: 527  tctattgtgaaatcaagcaacgaatgccctcagacccaagtgccttcttcccgacgtaaa 586
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2882 tctattgtgaaatcaagcaacgaatgccctcagacccaagtgccttcttcccgacgtaaa 2941

                                                                        
Query: 587  ctaatactaccgcctaaacaaattgcgttgactctcatttcgaaatcttgggattctgct 646
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2942 ctaatactaccgcctaaacaaattgcgttgactctcatttcgaaatcttgggattctgct 3001

                                                                        
Query: 647  tgtttattgttcagattttaccatagaccaacttttatcaaagtagtggaatcactttat 706
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 3002 tgtttattgttcagattttaccatagaccaacttttatcaaggtagtggaatcactttat 3061

                                                                        
Query: 707  acagttgaaaattttcg-atattcagagaagcaaaagcgatttctcccgcttgtttattc 765
            |||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3062 acag-tgaaaaatttcgaatattcagagaagcaaaagcgatttctcccgcttgtttattc 3120

                                                                        
Query: 766  tgtgatagcggtaggggctcttattctgtaaatcgtacgccgaatcatcagaccacaaac 825
            |||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||
Sbjct: 3121 tgtgatagcggtaggggctc-tattctgtaaatcgtacgccgaaacaacagaccacaaac 3179

                                                                        
Query: 826  -aatgatggnatttttttcagatggaaggcat-aattttttattgaagcctaatgtttac 883
             ||||||||  ||||||  ||||| | ||||| ||| ||| ||||||||  |||||||||
Sbjct: 3180 aaatgatggagttttttcaagatgaagggcataaatatttcattgaagctaaatgtttac 3239

                                                   
Query: 884  tcgatccgataaattctc-agatgttgagtcgctacagg 921
            |||||||||||||||||| ||||||||||||||||||||
Sbjct: 3240 tcgatccgataaattctcaagatgttgagtcgctacagg 3278


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6683
Number of Sequences: 1807
Number of extensions: 6683
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)