BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC33ZE02RM1.SCF screened BAC_end (926 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1441 1530 0.0 >3x_Contig1441 Length = 8574 Score = 1530 bits (772), Expect = 0.0 Identities = 858/879 (97%), Gaps = 6/879 (0%) Strand = Plus / Plus Query: 47 ttactgatggtttacgaaatgaagaaataggagtaggaacataaaggcgtatcaatctcc 106 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 2402 ttactgatggtttacgaaaagaagaaataggagtaggaacataaaggcgtatcaatctcc 2461 Query: 107 gttagttcaccaagatatccatttgaaaagatgatttcgttaacccttcctacagatatt 166 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2462 gttagttcaccaagatatccatttgaaaagatgatttcgttaacccttcctacagatatt 2521 Query: 167 cctaatgtttctgttctagccacggaaccttctactaaccagctggaacctgtacgacat 226 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2522 cctaatgtttctgttctagccacggaaccttctactaaccagctggaacctgtacgacat 2581 Query: 227 aaagttaaacatgcttgtagcagctgtaaggaaagaaaagttagatgtgatggtcagtct 286 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2582 aaagttaaacatgcttgtagcagctgtaaggaaagaaaagttagatgtgatggtcagtct 2641 Query: 287 ccttgtgctagttgtataaacgcaagggtgaaatgtgaatacgttatgaacatgaagcca 346 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2642 ccttgtgctagttgtataaacgcaagggtgaaatgtgaatacgttatgaacatgaagcca 2701 Query: 347 ttaaagaagaaacgcaaagttagttttataagatccaatttgtctaaaaatgaacttaaa 406 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2702 ttaaagaagaaacgcaaagttagttttataagatccaatttgtctaaaaatgaacttaaa 2761 Query: 407 ggtggaagttctgtgattagttctcaaaatgcacaaggcgttgattataagaaagtcttt 466 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2762 ggtggaagttctgtgattagttctcaaaatgcacaaggcgttgattataagaaagtcttt 2821 Query: 467 cattctttgttcccggacgttgatttatctcaaagtaacctatgtaccgagtcattgata 526 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2822 cattctttgttcccggacgttgatttatctcaaagtaacctatgtaccgagtcattgata 2881 Query: 527 tctattgtgaaatcaagcaacgaatgccctcagacccaagtgccttcttcccgacgtaaa 586 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2882 tctattgtgaaatcaagcaacgaatgccctcagacccaagtgccttcttcccgacgtaaa 2941 Query: 587 ctaatactaccgcctaaacaaattgcgttgactctcatttcgaaatcttgggattctgct 646 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2942 ctaatactaccgcctaaacaaattgcgttgactctcatttcgaaatcttgggattctgct 3001 Query: 647 tgtttattgttcagattttaccatagaccaacttttatcaaagtagtggaatcactttat 706 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 3002 tgtttattgttcagattttaccatagaccaacttttatcaaggtagtggaatcactttat 3061 Query: 707 acagttgaaaattttcg-atattcagagaagcaaaagcgatttctcccgcttgtttattc 765 |||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 3062 acag-tgaaaaatttcgaatattcagagaagcaaaagcgatttctcccgcttgtttattc 3120 Query: 766 tgtgatagcggtaggggctcttattctgtaaatcgtacgccgaatcatcagaccacaaac 825 |||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||| Sbjct: 3121 tgtgatagcggtaggggctc-tattctgtaaatcgtacgccgaaacaacagaccacaaac 3179 Query: 826 -aatgatggnatttttttcagatggaaggcat-aattttttattgaagcctaatgtttac 883 |||||||| |||||| ||||| | ||||| ||| ||| |||||||| ||||||||| Sbjct: 3180 aaatgatggagttttttcaagatgaagggcataaatatttcattgaagctaaatgtttac 3239 Query: 884 tcgatccgataaattctc-agatgttgagtcgctacagg 921 |||||||||||||||||| |||||||||||||||||||| Sbjct: 3240 tcgatccgataaattctcaagatgttgagtcgctacagg 3278 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6683 Number of Sequences: 1807 Number of extensions: 6683 Number of successful extensions: 50 Number of sequences better than 1.0e-20: 1 length of query: 926 length of database: 10,358,551 effective HSP length: 16 effective length of query: 910 effective length of database: 10,329,639 effective search space: 9399971490 effective search space used: 9399971490 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)