BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZE03FM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1801 1461 0.0
>3x_Contig1801
Length = 57606
Score = 1461 bits (737), Expect = 0.0
Identities = 788/803 (98%), Gaps = 2/803 (0%)
Strand = Plus / Plus
Query: 85 tgagaggtggtgctcaaatcattgttggtactccaggtcgtgttttcgatatgatcgacc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4077 tgagaggtggtgctcaaatcattgttggtactccaggtcgtgttttcgatatgatcgacc 4136
Query: 145 gtagaatcttcaagactgacaacatcaagatgttcatcttggatgaagccgatgaaatgt 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4137 gtagaatcttcaagactgacaacatcaagatgttcatcttggatgaagccgatgaaatgt 4196
Query: 205 tgtctactggtttcaaggaacaaatctacaacattttcaccatgttgccaccaacttccc 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4197 tgtctactggtttcaaggaacaaatctacaacattttcaccatgttgccaccaacttccc 4256
Query: 265 aagttgtcttgttgtctgctaccatgccaggtgatgtcttggaagtcacttccaagttca 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4257 aagttgtcttgttgtctgctaccatgccaggtgatgtcttggaagtcacttccaagttca 4316
Query: 325 tgaaggacccagtcagaatcttggttaagaaggatgaattgaccttggaaggtattggtc 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4317 tgaaggacccagtcagaatcttggttaagaaggatgaattgaccttggaaggtattggtc 4376
Query: 385 aatactacgttaacgttgaagaagaacaatacaagtacgactgtttgaccgatttgtacg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4377 aatactacgttaacgttgaagaagaacaatacaagtacgactgtttgaccgatttgtacg 4436
Query: 445 attctatctccgttacccaagctgttattttctgtaacaccagaagaaaggtcgaagaat 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4437 attctatctccgttacccaagctgttattttctgtaacaccagaagaaaggtcgaagaat 4496
Query: 505 tgaccgaaagattgagagaaaacaacttcaccgtctctgctatctactctgatttgcaac 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4497 tgaccgaaagattgagagaaaacaacttcaccgtctctgctatctactctgatttgcaac 4556
Query: 565 aacaggaaagagacaccatcatgaaggaattcagaagtggttcttcaagaattttgatct 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4557 aacaggaaagagacaccatcatgaaggaattcagaagtggttcttcaagaattttgatct 4616
Query: 625 ccactgatttgttggctagaggtatcgatgtccaacaagtctctttggttatcaactacg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4617 ccactgatttgttggctagaggtatcgatgtccaacaagtctctttggttatcaactacg 4676
Query: 685 acttgccatccaacaaggataactatatccacagaaatcgtagaggtggtcgtttcggta 744
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct: 4677 acttgccatccaacaaggaaaactatatccacagaatcggtagaggtggtcgtttcggta 4736
Query: 745 gaaagggtatagctatcaacttcgtcaccaataaggatatcggtgctatgagaggattgg 804
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 4737 gaaagggtattgctatcaacttcgtcaccaataaggatatcggtgctatgagagaattgg 4796
Query: 805 naagattctactctactcaaatngaagattgcccatc-agcatcagcgaattgttcga-t 862
||||||||||||||||||||| ||||| | ||||| |||||||||||||||||||| |
Sbjct: 4797 aaagattctactctactcaaattgaagaattgccatcaagcatcagcgaattgttcgatt 4856
Query: 863 aaaccttataaataaaaaaaaaa 885
|||| | ||||||||||||||||
Sbjct: 4857 aaacttaataaataaaaaaaaaa 4879
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8348
Number of Sequences: 1807
Number of extensions: 8348
Number of successful extensions: 83
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)