BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZE03RM1.SCF screened BAC_end
(945 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1767 1390 0.0
>3x_Contig1767
Length = 23302
Score = 1390 bits (701), Expect = 0.0
Identities = 831/863 (96%), Gaps = 10/863 (1%)
Strand = Plus / Minus
Query: 47 tattcagttggaaaatgttgattaatcactaggtttatatgtattagattgctgtttttg 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6003 tattcagttggaaaatgttgattaatcactaggtttatatgtattagattgctgtttttg 5944
Query: 107 gttgtcagatcttttgagaattgttcagtcgggggacttatgctttaggcagggataaaa 166
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 5943 gttgtcagatcttttgagaattgttcagtcgggggacttaggctttaggcagggataaaa 5884
Query: 167 tctacagtgctgttttgttgtagcatagtatatagaattggaaaaaaaaattaaagcata 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5883 tctacagtgctgttttgttgtagcatagtatatagaattggaaaaaaaaattaaagcata 5824
Query: 227 cttggggaagacaaggaacgaaagatagagaatagaacattggtgtgattatttgatcta 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5823 cttggggaagacaaggaacgaaagatagagaatagaacattggtgtgattatttgatcta 5764
Query: 287 atataacatcttcagaagggctatcactcatattaagttctgtgtgattatcaattgtat 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5763 atataacatcttcagaagggctatcactcatattaagttctgtgtgattatcaattgtat 5704
Query: 347 ttttttgtttgttaatattatgacggaaagcggtaatggaattgttaatacgaggcaacc 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5703 ttttttgtttgttaatattatgacggaaagcggtaatggaattgttaatacgaggcaacc 5644
Query: 407 gaagttgtttctcgatgttccggatatgacttctgaagcaaagaaaacgtacgctgagct 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5643 gaagttgtttctcgatgttccggatatgacttctgaagcaaagaaaacgtacgctgagct 5584
Query: 467 ggatgtatgtacgtatacgcctaaaaacttgggtgattctaagcatgagtttatggaatg 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5583 ggatgtatgtacgtatacgcctaaaaacttgggtgattctaagcatgagtttatggaatg 5524
Query: 527 tgactgttttgaggaatttcgggacggtttaaaccatgcgtgcggtgaggattctgattg 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5523 tgactgttttgaggaatttcgggacggtttaaaccatgcgtgcggtgaggattctgattg 5464
Query: 587 tataaatagagccactttaattgagtgtgtgaacgggtcttgcatacactcgtgcggtac 646
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 5463 tataaatagagccactttaattgagtgtgtgaacggtctttgcaaacactcgtgcggtac 5404
Query: 647 tgactgtcagatccaaagatttcagaagatagcgtatgcagatatatctgttttcaagac 706
||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 5403 tgactgtcagaaccaaagattccagaagaaagcgtatgcagatatatctgttttcaagac 5344
Query: 707 ggagcngaaaggttttcggcgttcgtgccaattctgatattgaaccacacaactttattt 766
||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 5343 ggagcggaaagg-tttcggcgtccgtgccaattctgatattgaaccacacaactttattt 5285
Query: 767 atgaatatatttggagaagttattcagggaaggatactatttcgtacccggatgggtgaa 826
||||||||| |||||||||| || |||| |||| | ||||||| |||||| ||||||
Sbjct: 5284 atgaatata-ttggagaagtaatacagg--agga-agagtttcgtaaccggat-ggtgaa 5230
Query: 827 aattgaccaaatgggaatttaagcccttctactttaatgatgttgcagtaccggacagtt 886
| |||||||||||| |||||||| |||||||||| |||||||||||| ||||||||| |
Sbjct: 5229 atatgaccaaatggg-atttaagcacttctacttt-atgatgttgcag-accggacag-t 5174
Query: 887 tcattgttgcttccctaaagggg 909
|||||| |||| | |||||||||
Sbjct: 5173 tcattgatgctacgctaaagggg 5151
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7715
Number of Sequences: 1807
Number of extensions: 7715
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 1
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)