BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZE04FM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1778 1507 0.0
>3x_Contig1778
Length = 27694
Score = 1507 bits (760), Expect = 0.0
Identities = 816/830 (98%), Gaps = 4/830 (0%)
Strand = Plus / Plus
Query: 90 catgtagcagccgttcgtaccagtaccaaagatacagccaattactggttcgttgatggc 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7637 catgtagcagccgttcgtaccagtaccaaagatacagccaattactggttcgttgatggc 7696
Query: 150 tcttgccgcatcactggaagcgtaacaacgagccaatagggttccagtagtgtcattagt 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7697 tcttgccgcatcactggaagcgtaacaacgagccaatagggttccagtagtgtcattagt 7756
Query: 210 caatgcaaccacatgaacatttgataacccaatatcgttcaattcttgttggaacagttg 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7757 caatgcaaccacatgaacatttgataacccaatatcgttcaattcttgttggaacagttg 7816
Query: 270 aacaacgtcttgcccaacagtatcaccgatcttgaaacccttggtccatctaatcaactt 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7817 aacaacgtcttgcccaacagtatcaccgatcttgaaacccttggtccatctaatcaactt 7876
Query: 330 accactgctcaaggaggtttgatcgactggatatgaaaaagtgaaacccattttccattt 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7877 accactgctcaaggaggtttgatcgactggatatgaaaaagtgaaacccattttccattt 7936
Query: 390 gtaatcttgaattacatccttatgatgtttagtcaaaaactgatgcgtgatcagggccat 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7937 gtaatcttgaattacatccttatgatgtttagtcaaaaactgatgcgtgatcagggccat 7996
Query: 450 atgttggaacaaatccttactggtaacatgatgatcgtcctggaagaagaaagttggaat 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7997 atgttggaacaaatccttactggtaacatgatgatcgtcctggaagaagaaagttggaat 8056
Query: 510 ctttgacttctcttgttcaatcttgaattcatgattacctaatagttccacagagcaaac 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8057 ctttgacttctcttgttcaatcttgaattcatgattacctaatagttccacagagcaaac 8116
Query: 570 tctgaaattagtaccacctaaatcagctgccaacatggttactccatgttcctgaccgga 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8117 tctgaaattagtaccacctaaatcagctgccaacatggttactccatgttcctgaccgga 8176
Query: 630 tggcttgtcagtcacaaacgtcggaatcataggcaaccctttgttttgactgatatctga 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8177 tggcttgtcagtcacaaacgtcggaatcataggcaaccctttgttttgactgatatctga 8236
Query: 690 ttcacagggttctaatcccttttccatacaatcgatgaaatactcagtcaactgagatat 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8237 ttcacagggttctaatcccttttccatacaatcgatgaaatactcagtcaactgagatat 8296
Query: 750 cttcgatttagtaacaatgaactgatcgcatatagaatcaaccgcctttggttaaactta 809
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct: 8297 cttcgatttagtaacaatgaactgatcgcatatagaatcaaccgcc-ttggtt-aactta 8354
Query: 810 agatctgacattatgctctagttgntattctttttagcttgtcttggccngtcttgtcta 869
||||||||||||||||||||||| ||||| ||||||||||||||| | ||||||||||
Sbjct: 8355 ggatctgacattatgctctagttgttattc-ttttagcttgtcttgtcgtgtcttgtcta 8413
Query: 870 ctctttaaacaggatccctggatcttttctacaaagtaaaaagtttgaat 919
|||||| |||| || ||| |||||||||||||||||||||||| |||||
Sbjct: 8414 ctcttt-aacaagaatccttgatcttttctacaaagtaaaaagtatgaat 8462
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5979
Number of Sequences: 1807
Number of extensions: 5979
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)