BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZE04RM1.SCF screened BAC_end
(905 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1725 938 0.0
3x_Contig1560 456 e-128
>3x_Contig1725
Length = 17473
Score = 938 bits (473), Expect = 0.0
Identities = 555/572 (97%), Gaps = 8/572 (1%)
Strand = Plus / Plus
Query: 276 cgttgttgatatggttgctgtccctagtgaagtagcacaactggatattttttcaaactc 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18 cgttgttgatatggttgctgtccctagtgaagtagcacaactggatattttttcaaactc 77
Query: 336 cactggtgctcctacacgcaaagaggcgctcaatacgtctgttcccttcgtttcgacaca 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78 cactggtgctcctacacgcaaagaggcgctcaatacgtctgttcccttcgtttcgacaca 137
Query: 396 tactatcggaattttgtcagctaaattataccgttgcaaacccaaaatcaacccgttata 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 tactatcggaattttgtcagctaaattataccgttgcaaacccaaaatcaacccgttata 197
Query: 456 tagacctccgcctccaaaactgcaaacaatacctttaattttggttataggtatttttga 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 tagacctccgcctccaaaactgcaaacaatacctttaattttggttataggtatttttga 257
Query: 516 actagccaagacatccatgatttcatccaccataaaggaatggccttcccaaattagcgg 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 actagccaagacatccatgatttcatccaccataaaggaatggccttcccaaattagcgg 317
Query: 576 attatcgaaaggatggctgtaaattggctcgta-ttaaaggaatcaagtttcttcataaa 634
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 318 attatcgaaaggatggctgtaaattggctcgtatttaaaggaatcaagtttcttcataag 377
Query: 635 gtgctccttcatgaaagaatctgcctctttccaatggttaccatgaacaacatcatctgc 694
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 378 gtgctccttcatgaaagaatctgcctctttccaatggttaccatgaacaacaacatctgc 437
Query: 695 gccgtaggagcgaatctttttctat-attcttggacgtgttgcattcgacacaactactg 753
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 438 gccgtaggagcgaatc-ttttctataattcttggacgtgttgcattcgacacaactactg 496
Query: 754 tacagggaacgtttcatttcgagggacgccaccggcggcggcaattncagcgtttaccgc 813
||||||||||| |||| |||||||||||| |||| || || ||| | ||||| |||||||
Sbjct: 497 tacagggaacg-ttcaattcgagggacgcaaccgccgccgccaa-tccagcg-ttaccgc 553
Query: 814 cagagctagccatacacgtggaccgatttttt 845
||||||||| || |||||| ||||||||||||
Sbjct: 554 cagagctag-caaacacgt-gaccgatttttt 583
>3x_Contig1560
Length = 9209
Score = 456 bits (230), Expect = e-128
Identities = 244/246 (99%), Gaps = 2/246 (0%)
Strand = Plus / Minus
Query: 49 tagatgacccaccacaaccgatcaagatgacataatcatcatctttaatgtctgaaccga 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tagatgacccaccacaaccgatcaagatgacataatcatcatctttaatgtctgaaccga 186
Query: 109 gaatattttgtagtttatcgatattatatcccgaagtataacgttgccccacacccaggt 168
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 185 gaatattttgtagtttatcgatattata-cccgaagtataacgttgccccacacccaggt 127
Query: 169 tccgcaactatgttggtatcgttagaaaattgaaggcaagttgaaatcacttcagtatca 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 tccgcaactatgttggtatcgttagaaaattgaaggcaagttgaaatcacttcagtatca 67
Query: 229 gagatgacagctgacttgcttccgtgacgtttcacatttt-ggtaagccgttgttgatat 287
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 66 gagatgacagctgacttgcttccgtgacgtttcacattttgggtaagccgttgttgatat 7
Query: 288 ggttgc 293
||||||
Sbjct: 6 ggttgc 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6367
Number of Sequences: 1807
Number of extensions: 6367
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 2
length of query: 905
length of database: 10,358,551
effective HSP length: 16
effective length of query: 889
effective length of database: 10,329,639
effective search space: 9183049071
effective search space used: 9183049071
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)