BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZE05RM1.SCF screened BAC_end
(916 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1607 1362 0.0
>3x_Contig1607
Length = 10159
Score = 1362 bits (687), Expect = 0.0
Identities = 709/714 (99%), Gaps = 2/714 (0%)
Strand = Plus / Minus
Query: 42 caagctttaaaccggtattcagaatattaaaggaaacagtaagtaatggcagttatttca 101
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 6499 caagctttaaaccggtattcagaataataaaggaaacagtaagtaatggcagttatttca 6440
Query: 102 gtgcgtgggcttgatgccgtcgtgtctaaggatgaatcgttgggggaggaagttgtagag 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6439 gtgcgtgggcttgatgccgtcgtgtctaaggatgaatcgttgggggaggaagttgtagag 6380
Query: 162 gggaatattgatgcttgtaaggaatcagtgaggtctcatgagcatgatgacaatgccatg 221
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 6379 gggaatattgatgcttgtaaggaatcagtgaggtctcatgagcatgatgacaatgcca-g 6321
Query: 222 ttacgatgaaccaccaagcttgactcatccgatggagtcacgtgttgtgaggaaaatgga 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6320 ttacgatgaaccaccaagcttgactcatccgatggagtcacgtgttgtgaggaaaatgga 6261
Query: 282 tttatacttggttcccttgatgtgtatgctatatttcttgtccaatttggataagtctaa 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6260 tttatacttggttcccttgatgtgtatgctatatttcttgtccaatttggataagtctaa 6201
Query: 342 cattggtaacgctgaagtcgctggtctctctgagtctttgaatttaacaggtaaccagta 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6200 cattggtaacgctgaagtcgctggtctctctgagtctttgaatttaacaggtaaccagta 6141
Query: 402 cggtaactgtgtgactgtgttctatgcgacgtatatcttctttgatccaattggtgctaa 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6140 cggtaactgtgtgactgtgttctatgcgacgtatatcttctttgatccaattggtgctaa 6081
Query: 462 cttgttgaaaattattgggcccaagtatatgatgaccggatgtttgatttgctttggtgc 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6080 cttgttgaaaattattgggcccaagtatatgatgaccggatgtttgatttgctttggtgc 6021
Query: 522 catttctttggggacagcttgggtaaaagattatggacatttactcttggttagagttct 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6020 catttctttggggacagcttgggtaaaagattatggacatttactcttggttagagttct 5961
Query: 582 attgggagcatttgaggccaccatttatccatcaattaacatgtatntgtcaatctgcta 641
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 5960 attgggagcatttgaggccaccatttatccatcaattaacatgtatttgtcaatctgcta 5901
Query: 642 tcgtcgtgaacagtatgcgattagattcgcatgggttttctttgctgcatgtatatcttc 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5900 tcgtcgtgaacagtatgcgattagattcgcatgggttttctttgctgcatgtatatcttc 5841
Query: 702 ctcgtttggtggggttgatctcgtacggttgttcaaagattaatgtttctttga 755
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 5840 ctcgtttggt-gggttgatctcgtacggttgttcaaagattaatggttctttga 5788
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6155
Number of Sequences: 1807
Number of extensions: 6155
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)