BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZE06RM1.SCF screened BAC_end
(952 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig789 1259 0.0
>3x_Contig789
Length = 3508
Score = 1259 bits (635), Expect = 0.0
Identities = 718/737 (97%), Gaps = 7/737 (0%)
Strand = Plus / Plus
Query: 55 ctctcttattatgactatgtcatcagttgtagatcctctttcggtacttgggcctattga 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 878 ctctcttattatgactatgtcatcagttgtagatcctctttcggtacttgggcctattga 937
Query: 115 tttcctgttttccaaaattaaagccttaatcctttctgtaagccttacaatgttgttatt 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 938 tttcctgttttccaaaattaaagccttaatcctttctgtaagccttacaatgttgttatt 997
Query: 175 actactgtttgtactggcattgctgctgtggctgttatctcttgaaagaagtttgagctg 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 998 actactgtttgtactggcattgctgctgtggctgttatctcttgaaagaagtttgagctg 1057
Query: 235 attttccctttccttttgcatctcaatcggtacatgatattctccgttgaataaattttt 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1058 attttccctttccttttgcatctcaatcggtacatgatattctccgttgaataaattttt 1117
Query: 295 taaatatgatacttcatcggacggtttagcaattaatgcagtggactgctgttgctggtt 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1118 taaatatgatacttcatcggacggtttagcaattaatgcagtggactgctgttgctggtt 1177
Query: 355 cttatgcttgagttttctatagagtctagttccatattgtactcttgtaggtgaggattc 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1178 cttatgcttgagttttctatagagtctagttccatattgtactcttgtaggtgaggattc 1237
Query: 415 tgtatagttttcttcattagtattatcccaatggaaaggatccttaggtaacttcaacac 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1238 tgtatagttttcttcattagtattatcccaatggaaaggatccttaggtaacttcaacac 1297
Query: 475 ttctttcgttggagtaattgaatgttgtaactgttcccttaaatgctccttctcttggag 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1298 ttctttcgttggagtaattgaatgttgtaactgttcccttaaatgctccttctcttggag 1357
Query: 535 cagtgagtctaaatgaattttctttctcggagtcgactcctcatcaactcctcttntcaa 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1358 cagtgagtctaaatgaattttctttctcggagtcgactcctcatcaactcctcttttcaa 1417
Query: 595 actgtcgtaatttgctccagtagtgttggaaatgttacgatcttttcca-tttcttgcnt 653
|||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||
Sbjct: 1418 actgtcgtaatttgctccagtagtgttggaaatggtacgatctttcccattttcttgctc 1477
Query: 654 caaaggatcaattcaggataaccatgtctttgctgaatcaaaaagagtttgaaaggacag 713
|||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1478 caaaggatcaatccaggaaaaccatgtctttgctgaatcaaaaagag-ttgaaaggacag 1536
Query: 714 tatttatatccaatcgatttccaccctactttcgcttacctttatcacgtgccttcattt 773
|| |||||||| | ||||||||| ||||||||||| ||||| ||||||||| |||||||
Sbjct: 1537 ta-ttatatcccaacgatttcca-cctactttcgc-tacctctatcacgtg-cttcatta 1592
Query: 774 acagaaatttaaactat 790
||| ||||||||||||
Sbjct: 1593 ccag-aatttaaactat 1608
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7964
Number of Sequences: 1807
Number of extensions: 7964
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 1
length of query: 952
length of database: 10,358,551
effective HSP length: 16
effective length of query: 936
effective length of database: 10,329,639
effective search space: 9668542104
effective search space used: 9668542104
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)