BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZE07RM1.SCF screened BAC_end
(883 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1759 1191 0.0
>3x_Contig1759
Length = 25622
Score = 1191 bits (601), Expect = 0.0
Identities = 656/669 (98%), Gaps = 4/669 (0%)
Strand = Plus / Plus
Query: 47 tatttcgagccgggtatctcatgagagacaatagtatatccattcactgaaactaccaaa 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10032 tatttcgagccgggtatctcatgagagacaatagtatatccattcactgaaactaccaaa 10091
Query: 107 tcagctctttcatctaacatcaaggggcatcggaatttgattctcttgatttcctttgtt 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10092 tcagctctttcatctaacatcaaggggcatcggaatttgattctcttgatttcctttgtt 10151
Query: 167 cttttcactttcgattttatgtacgatgcattaatgggattagtactagggccgtgtgag 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10152 cttttcactttcgattttatgtacgatgcattaatgggattagtactagggccgtgtgag 10211
Query: 227 gatagccatgattgtgcttcgttgatctttgaaccccatttcaagatatctgcatacata 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10212 gatagccatgattgtgcttcgttgatctttgaaccccatttcaagatatctgcatacata 10271
Query: 287 gaatcgtcaaatggtttatcttcagaaccaatgaaaaatgtgacaaaattgatataatag 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10272 gaatcgtcaaatggtttatcttcagaaccaatgaaaaatgtgacaaaattgatataatag 10331
Query: 347 tcatataaatcgtcgacaacttttctaagacgagatctgctgtcaacgttcaagaactca 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10332 tcatataaatcgtcgacaacttttctaagacgagatctgctgtcaacgttcaagaactca 10391
Query: 407 gccggtttgtcgtcatcagtaaaaaaaaatattttcttgttagtcagttgcttctgtcct 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10392 gccggtttgtcgtcatcagtaaaaaaaaatattttcttgttagtcagttgcttctgtcct 10451
Query: 467 tctatcggttgtaaaaatgtttctctaactttgatcaatactggagaaagttcaattggg 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10452 tctatcggttgtaaaaatgtttctctaactttgatcaatactggagaaagttcaattggg 10511
Query: 527 ttgtttgggtctgcgataggaatctcatctttgag-agtattctatcctggtctatatct 585
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 10512 ttgtttgggtctgcgataggaatctcatctttgagaagtattctatcctgttctatatct 10571
Query: 586 tccaacagatcagatacacgtttcatattcttat-gttcacatcacgtaacgggtatagt 644
|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct: 10572 tccaacagatcagatacacgtttcatattcttatagttcacatcacgtaacggtattagt 10631
Query: 645 tcattcaca-tatcttcagcgttaggatgagaacagtggaaaat-ttacagccacctgca 702
|||| |||| ||||||||||||||||||||||||||| | |||| | ||||||| |||||
Sbjct: 10632 tcatacacattatcttcagcgttaggatgagaacagttgtaaatataacagccaactgca 10691
Query: 703 gtacttggc 711
|||||||||
Sbjct: 10692 gtacttggc 10700
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7897
Number of Sequences: 1807
Number of extensions: 7897
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 883
length of database: 10,358,551
effective HSP length: 16
effective length of query: 867
effective length of database: 10,329,639
effective search space: 8955797013
effective search space used: 8955797013
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)