BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC33ZE08RM1.SCF screened BAC_end
         (914 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig150                                                          797   0.0  

>3x_Contig150 
          Length = 1017

 Score =  797 bits (402), Expect = 0.0
 Identities = 557/602 (92%), Gaps = 5/602 (0%)
 Strand = Plus / Minus

                                                                        
Query: 228  aaagaaagcatttcttcaaacgtcgatcccgtaccaatttttgaggccactaaatcactg 287
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1017 aaagaaagcatttcttcaaacgtcgatcccgtaccaatttttgaggccactaaatcactg 958

                                                                        
Query: 288  ctctcgattcccaaattttctccaatagcattgaaatctttgacaaacgattcataagcc 347
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 957  ctctcgagtcccaaattttctccaatagcattgaaatctttgacaaacgattcataagcc 898

                                                                        
Query: 348  tgtgcttctttttcagtaatgggaacagtatcatgtgttccgacaagagaaaaaagtcta 407
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 897  tgtgcttctttttcagtaatgggaacggtatcatgtgttccgacaagagaaaaaagtcta 838

                                                                        
Query: 408  ataaacgtattctgctctgtttcaaacaaatctctcatgtttttcaaatggagtaaaacg 467
            ||||||||||||||||||||||||||||||| | | | ||||||||||||||||||||||
Sbjct: 837  ataaacgtattctgctctgtttcaaacaaatgtgtgaggtttttcaaatggagtaaaacg 778

                                                                        
Query: 468  tataattgcaggtgcgtcagttcttgcgatgcttccggaatatcgagttgcaatgggatg 527
            |||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 777  tataattgtaggtgcgtcagttcttccgatgtttccggaatatcgagttgcaatgggatg 718

                                                                        
Query: 528  atttcatataccttacgtaatacgacagaagtatttgacagaataatggattcaattaat 587
            |||||| |||||||| |||||||||||||||||||||| |||||||||  ||||||||||
Sbjct: 717  atttcaaataccttaggtaatacgacagaagtatttgagagaataatgttttcaattaat 658

                                                                        
Query: 588  ttgttc-aaactccatgactgatcttgggtttatctctaatgagatcgat-atatggata 645
            |||||| ||||| ||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 657  ttgttccaaacttcatgactgatcttgggtttatctctaatgagattgattatatggata 598

                                                                        
Query: 646  ctgcatgcaacatctgtgactgtcattacttttt-gtcatctctaatg-cgatcggttca 703
            |||| ||||||||||||||||||||||||||||| | ||||||||||| |||| || |||
Sbjct: 597  ctgcgtgcaacatctgtgactgtcattacttttttgccatctctaatgtcgattggatca 538

                                                                        
Query: 704  aagttgaccaagcgatttaaa-ctgtttttcaaacctcttttggaagcttttcggtacct 762
            ||||||||||||||||||||| ||||| |  || | || | || ||||||| ||||||  
Sbjct: 537  aagttgaccaagcgatttaaaactgttatcaaagcatcatctgaaagctttacggtacta 478

                                                                        
Query: 763  aagtttttttaaaaatactcccatggacttttaactttttctggggtatttttaagcact 822
            ||||| | || |||||||||||||| |||||||||| || ||||| |||||| ||| |||
Sbjct: 477  aagttctcttcaaaatactcccatgaacttttaactcttcctgggttattttcaagtact 418

              
Query: 823  tg 824
            ||
Sbjct: 417  tg 416


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7672
Number of Sequences: 1807
Number of extensions: 7672
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)