BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZE09FM1.SCF screened BAC_end
(912 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1761 1047 0.0
>3x_Contig1761
Length = 23186
Score = 1047 bits (528), Expect = 0.0
Identities = 564/571 (98%), Gaps = 5/571 (0%)
Strand = Plus / Minus
Query: 73 tctattgcgtgtactacaagattttctacgtgcgttccaaagatttttctgctgcttact 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 tctattgcgtgtactacaagattttctacgtgcgttccaaagatttttctgctgcttact 512
Query: 133 tctcgtaaatattccgtatgaacttagaagactttgcgggcgtaggcgataaccttgcca 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 tctcgtaaatattccgtatgaacttagaagactttgcgggcgtaggcgataaccttgcca 452
Query: 193 tctatcaccagagaaggaatggtcgcccaaaattcacatttgtctatagaacatcgcata 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 tctatcaccagagaaggaatggtcgcccaaaattcacatttgtctatagaacatcgcata 392
Query: 253 gctgaagtgaactcatgcaataagcactttcaaataattgttttctctttccatccatcg 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 gctgaagtgaactcatgcaataagcactttcaaataattgttttctctttccatccatcg 332
Query: 313 taatatacatctcagtacagaatacttgcagaaatccacgcaggaaagtcattttctttt 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 taatatacatctcagtacagaatacttgcagaaatccacgcaggaaagtcattttctttt 272
Query: 373 ttttttttgtttcgagaacacttttttccatcttagctgatgcgatgcctattattggct 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 ttttttttgtttcgagaacacttttttccatcttagctgatgcgatgcctattattggct 212
Query: 433 gaagaaatcaaagtggaagaaaatcggtatgtatagagactgtatcaggtaacctgacaa 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 gaagaaatcaaagtggaagaaaatcggtatgtatagagactgtatcaggtaacctgacaa 152
Query: 493 cacgttgcatgccataccggtcattttcttttctcttttcagatttgataggctgcagat 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 cacgttgcatgccataccggtcattttcttttctcttttcagatttgataggctgcagat 92
Query: 553 atccgttgtagatctcccccc-atttttgccttttgtttcggatattttt-ccaaga-ta 609
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||
Sbjct: 91 atccgttgtagatctccccccaatttttgccttttgtttcggatatttttcccaagatta 32
Query: 610 ggtgagataaa--ttagagcatgatgtgata 638
||||||| ||| | ||||||||||||||||
Sbjct: 31 ggtgagaaaaaattcagagcatgatgtgata 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,454
Number of Sequences: 1807
Number of extensions: 13454
Number of successful extensions: 231
Number of sequences better than 1.0e-20: 1
length of query: 912
length of database: 10,358,551
effective HSP length: 16
effective length of query: 896
effective length of database: 10,329,639
effective search space: 9255356544
effective search space used: 9255356544
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)