BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZE09RM1.SCF screened BAC_end
(941 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1199 1292 0.0
>3x_Contig1199
Length = 6044
Score = 1292 bits (652), Expect = 0.0
Identities = 776/805 (96%), Gaps = 11/805 (1%)
Strand = Plus / Plus
Query: 46 catgaacgtattgtcaatcatcttggcgctagtgagatttttccacgcttagaagctgat 105
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 2032 catgaacgtattgtcaatcaacttggcgctagtgagatttttccacgcttagaagctgat 2091
Query: 106 gagttgggacttgctgggagtaataaggatactggaaatggagttgaatccgtctactat 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2092 gagttgggacttgctgggagtaataaggatactggaaatggagttgaatccgtctactat 2151
Query: 166 gaatttgagaaaagaatcatcgcctacatgttagagaagtaccccaacagatagcacgat 225
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 2152 gaatttgagaaaagaatcatcgcctacatgttagagaagtaccccaacagaaagcacgat 2211
Query: 226 ggcaaaatgatgcccagagtaggcctagccgaagatgtttacttgaaaccgagcaatata 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2212 ggcaaaatgatgcccagagtaggcctagccgaagatgtttacttgaaaccgagcaatata 2271
Query: 286 ttagaaatatccactgttaatggatcgacaaatgatcagctacctgattctaagattcaa 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2272 ttagaaatatccactgttaatggatcgacaaatgatcagctacctgattctaagattcaa 2331
Query: 346 tttgttggagatgagacaataagacatggaaccgttaagaaaaacaaccaaataactgct 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2332 tttgttggagatgagacaataagacatggaaccgttaagaaaaacaaccaaataactgct 2391
Query: 406 aaagatcattttcaggacgttcgacaatttgtgtttgaaaccgaggatcatgaagcctat 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2392 aaagatcattttcaggacgttcgacaatttgtgtttgaaaccgaggatcatgaagcctat 2451
Query: 466 catccaggcgatacagtttctttatatcccgaaaattcagacaatgacgttgaattattc 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2452 catccaggcgatacagtttctttatatcccgaaaattcagacaatgacgttgaattattc 2511
Query: 526 ctcgaagctcaacctcattggaagaaggtcgctgatgaactttctacaataacagacctg 585
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 2512 ctcgaagctcaacctcattggaagaaggtcgctgatgaacttcttacaataacagacctg 2571
Query: 586 gataattgtgatcggttcagagatggtggtgttgtgaaaccacttactctaagaa-cttg 644
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 2572 gaaaattgtgatcggttcagagatggtggtgttgtgaaaccacttactctaagaaccttg 2631
Query: 645 ttaanatatcattttgatatcgtcagtatacctaagcagagcttcttcatg-aaacttgg 703
|||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 2632 ttaaaatatcattttgatatcgtcagtatacctaggcagagcttcttcatgaaaacttgg 2691
Query: 704 acttttgc-aatgctcacgaagattgaccaaccgatcaagagcttttagaccanccgagg 762
|||||||| ||||||||||||||| ||||||||||||||||||| ||||| || | || |
Sbjct: 2692 acttttgcaaatgctcacgaagatagaccaaccgatcaagagctattagaacaacaga-g 2750
Query: 763 ggttaaactaaggacaggttcggggtttgggacaggacctacagggacttgtatgatttt 822
|| |||||||| |||| ||||||| | ||||| |||||||| |||||||||||| ||
Sbjct: 2751 ggataaactaa-gaca-gttcggg--tatggacaagacctaca-ggacttgtatga-tta 2804
Query: 823 ttgcaatagacccaggaagatcagt 847
|||||||||| ||| ||||||||||
Sbjct: 2805 ttgcaataga-ccaagaagatcagt 2828
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6536
Number of Sequences: 1807
Number of extensions: 6536
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)