BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZE10RM1.SCF screened BAC_end
(868 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1652 1235 0.0
>3x_Contig1652
Length = 14842
Score = 1235 bits (623), Expect = 0.0
Identities = 759/796 (95%), Gaps = 7/796 (0%)
Strand = Plus / Minus
Query: 48 cttgagtctttccttcctttcttcagctttcttggatctcttcttttcatccttcgcatt 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12559 cttgagtctttccttcctttcttcagctttcttggatctcttcttttcatccttcgcatt 12500
Query: 108 cgaaatggtgagaaccttttgcatgaaggaacgtgcctttttctcttcgccgcctagaac 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12499 cgaaatggtgagaaccttttgcatgaaggaacgtgcctttttctcttcgccgcctagaac 12440
Query: 168 gacagctctcttagccatgtatgttttcttcttttgcggtttcatttgatagatctggga 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12439 gacagctctcttagccatgtatgttttcttcttttgcggtttcatttgatagatctggga 12380
Query: 228 tttgaaaggtaagtctttggcaacagattttggtacctttaaaccgttgaagttcctttc 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12379 tttgaaaggtaagtctttggcaacagattttggtacctttaaaccgttgaagttcctttc 12320
Query: 288 aactctttcaaccttcttatatgtactgtcattgttggtcggtaaatcgattccaagaga 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12319 aactctttcaaccttcttatatgtactgtcattgttggtcggtaaatcgattccaagaga 12260
Query: 348 tgctctaatttgaccagttagtctcaaacccttccattcagttttatcttttagcaacaa 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12259 tgctctaatttgaccagttagtctcaaacccttccattcagttttatcttttagcaacaa 12200
Query: 408 tgaagtaactgggttgtagaatttcttaacttggattggataccatgacctaagaattat 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12199 tgaagtaactgggttgtagaatttcttaacttggattggataccatgacctaagaattat 12140
Query: 468 aatgtcactcaatagtatcttatcctcaaaagttgccctgaaatggccttctggttttga 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12139 aatgtcactcaatagtatcttatcctcaaaagttgccctgaaatggccttctggttttga 12080
Query: 528 tagagcacgcttgatttcaccacgaataccgg-aacagtcttgatttgggcaccttcgga 586
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct: 12079 tagagcacgcttgatttcaccacgaataccggaaacagtcttgatttgggcaccttcgaa 12020
Query: 587 ccgtgcatcttncatagcgctagagaacatatncctttatgagngcagtgntctttgaag 646
||||||| ||| |||||||||||||||||||| ||||||||| |||||| || ||||||
Sbjct: 12019 ccgtgcaacttccatagcgctagagaacatat-cctttatgaaggcagtgttc-ttgaag 11962
Query: 647 attttgttagggatacccacaagcttt-atttctttacaattttctacgcttgcattgat 705
||||||| ||| ||| ||||||||| ||||||| |||| ||||||||||||||| |||
Sbjct: 11961 attttgtaaggataaccaacaagctttaatttcttcacaa-tttctacgcttgcatcgat 11903
Query: 706 cttctctacaataccaatcgcagctattctgaaacttcccagtggattactgttagcacc 765
|| ||||||||||||| |||||||||||||||||||||| || || |||||||||| |
Sbjct: 11902 ctcctctacaataccagtcgcagctattctgaaacttccagttgtatcactgttagcaac 11843
Query: 766 tatttgaacaccccagaaaggggtattttggcggagcccaagggacccttgaaagaaacc 825
|||||||||||| ||||||| |||| |||||| |||| ||||||||| | ||||||| |
Sbjct: 11842 tatttgaacaccacagaaagtggta-tttggc-gagcacaagggaccatagaaagaagct 11785
Query: 826 gttcaataagcctgtt 841
|| |||||||| ||||
Sbjct: 11784 gtacaataagcatgtt 11769
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6547
Number of Sequences: 1807
Number of extensions: 6547
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 868
length of database: 10,358,551
effective HSP length: 16
effective length of query: 852
effective length of database: 10,329,639
effective search space: 8800852428
effective search space used: 8800852428
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)