BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZE11FM1.SCF screened BAC_end
(931 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1803 1350 0.0
>3x_Contig1803
Length = 52241
Score = 1350 bits (681), Expect = 0.0
Identities = 803/832 (96%), Gaps = 10/832 (1%)
Strand = Plus / Minus
Query: 87 tagaaattgattacattgacgaaagtgaggttttgactcctgctgactggaaaggacata 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32707 tagaaattgattacattgacgaaagtgaggttttgactcctgctgactggaaaggacata 32648
Query: 147 tcaagaagaacgatttcaatgtaccatttgtttgcggtgcaaaagatctcggtgaagcac 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32647 tcaagaagaacgatttcaatgtaccatttgtttgcggtgcaaaagatctcggtgaagcac 32588
Query: 207 ttagaagaatagaagaaggtgcagcaatgatccgtaccaagggtgaagctggtactggtg 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32587 ttagaagaatagaagaaggtgcagcaatgatccgtaccaagggtgaagctggtactggtg 32528
Query: 267 atgtttctgaagcagttaagcatatcaaaaagattaaatctgaaattaaggaatatcaag 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32527 atgtttctgaagcagttaagcatatcaaaaagattaaatctgaaattaaggaatatcaag 32468
Query: 327 atactctcggtgatgacacagatttcattaagcaacgcgctgaatctattggtgtttctt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32467 atactctcggtgatgacacagatttcattaagcaacgcgctgaatctattggtgtttctt 32408
Query: 387 atgagttactaaagtatgttttggataacgggaagttaccagttgtgaactttgctgccg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32407 atgagttactaaagtatgttttggataacgggaagttaccagttgtgaactttgctgccg 32348
Query: 447 gtggtgttgccactcctgccgatgccgctttattaatgcaatt--gggttgtgaaggtgt 504
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 32347 gtggtgttgccactcctgccgatgccgctttattaatgcaattgcgggttgtgaaggtgt 32288
Query: 505 atttgtcgggtcaggtatcttcaaatcttctgacccagaaaagctagctcgtgcaattgt 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32287 atttgtcgggtcaggtatcttcaaatcttctgacccagaaaagctagctcgtgcaattgt 32228
Query: 565 ggaagctactacccattacgatgatgcagaaactttgttgaaagtgtcaactgatttggg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32227 ggaagctactacccattacgatgatgcagaaactttgttgaaagtgtcaactgatttggg 32168
Query: 625 tgacctaatgggtggattgtcaatagaatccttgatg-actccgataaccct-aaaggtt 682
||||||||||||||||||||||||||||||||||| | ||||||| |||||| |||||||
Sbjct: 32167 tgacctaatgggtggattgtcaatagaatccttgaagaactccgaaaaccctaaaaggtt 32108
Query: 683 ggc-aacatcggctggtagttacgaaacagtatacagcgataggtatttttacatatttc 741
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32107 ggcaaacatcggctggtagttacgaaacagtatacagcgataggtatttttacatattca 32048
Query: 742 agtaaagacgaacaaaagtttatattgattttataatgctgccttggtaacaacttatcc 801
|||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 32047 agtaaagacgaacaaaagtttatattgattttataatgctgctttgttaacaacttatca 31988
Query: 802 aacaagagagtattcacttttacattttaggaatcacaacctggttttacgagaggaagc 861
|||||||||||| ||| |||||| ||||||| ||||||||| | || |||||| |||||
Sbjct: 31987 aacaagagagta-tcagctttacaatttaggagtcacaacct-gattaacgaga-gaagc 31931
Query: 862 tgttttaccattttttaagcaaatactttattacgattacgcaattgcgtaa 913
|| | |||||||||| | |||||||||| || ||||| ||| ||||||||||
Sbjct: 31930 tg-tataccatttttcaggcaaatacttaataacgataacg-aattgcgtaa 31881
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6737
Number of Sequences: 1807
Number of extensions: 6737
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)