BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZE11RM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1385 1215 0.0
>3x_Contig1385
Length = 5361
Score = 1215 bits (613), Expect = 0.0
Identities = 625/629 (99%)
Strand = Plus / Plus
Query: 50 tagccgcttcgtagtcatcgaagttcgcataacgagcagtaggaatattgtgcttctgca 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4732 tagccgcttcgtagtcatcgaagttcgcataacgagcagtaggaatattgtgcttctgca 4791
Query: 110 tgaaatcctttgagaatgttttggaaccttcaaaaatggcagccttggcacttgggccaa 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4792 tgaaatcctttgagaatgttttggaaccttcaaaaatggcagccttggcacttgggccaa 4851
Query: 170 agaccggaataccaatactttggaaaacttgagtaatcccatccaccaacggttgttctg 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4852 agaccggaataccaatactttggaaaacttgagtaatcccatccaccaacggttgttctg 4911
Query: 230 gacctggtacaaccaagccgatgttcttctccaatacaaactccttcaaagcagaaaagt 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4912 gacctggtacaaccaagccgatgttcttctccaatacaaactccttcaaagcagaaaagt 4971
Query: 290 tttctggagatggactaagttctggaacgttaacaacattttcaaccgtggccgtaccac 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4972 tttctggagatggactaagttctggaacgttaacaacattttcaaccgtggccgtaccac 5031
Query: 350 cattacctggagcaacataaatagtgctaacagaggcagattgggctaacttccacacca 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5032 cattacctggagcaacataaatagtgctaacagaggcagattgggctaacttccacacca 5091
Query: 410 atgcgtgttctctaccaccgttacctaaaaccaaaatattcaaagacattttactttctt 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5092 atgcgtgttctctaccaccgttacctaaaaccaaaatattcaaagacattttactttctt 5151
Query: 470 tttattgctgggatgagccgtttataaacagacgacgagttaatatcgaatgaatcacta 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5152 tttattgctgggatgagccgtttataaacagacgacgagttaatatcgaatgaatcacta 5211
Query: 530 gtgttttaccacagtaactttacaacacaaagtatagaccaactgttacctatttaacta 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 5212 gtgttttaccacagtaactttacaacacaaagtatagaccaactgttacctatttcccta 5271
Query: 590 aacattacaacactaatattcgagatctcctctctggttctcaatttttcttgacttctg 649
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 5272 aacattacaacactaatattcgagatctcctctctggttctcaatttaccttgacttctg 5331
Query: 650 tggatgtgcttttccaatcatacgttgaa 678
|||||||||||||||||||||||||||||
Sbjct: 5332 tggatgtgcttttccaatcatacgttgaa 5360
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7282
Number of Sequences: 1807
Number of extensions: 7282
Number of successful extensions: 69
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)