BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZE12FM1.SCF screened BAC_end
(988 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1319 763 0.0
>3x_Contig1319
Length = 7600
Score = 763 bits (385), Expect = 0.0
Identities = 416/425 (97%), Gaps = 1/425 (0%)
Strand = Plus / Plus
Query: 91 tttaacttttttaaattttttttgtacccctcggtacctgcatgcctttctgccgcaata 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4314 tttaacttttttaaattttttttgtacccctcggtacctgcatgcctttctgccgcaata 4373
Query: 151 tctgcactaaacgacataaaaggaataagaccgttttttgtggcaagtacgacgaaacaa 210
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 4374 tctgcactaaacgacataaaaggaagaagaccgttttttgtggcaagtacgacgaaacaa 4433
Query: 211 gtgaaaaggcttttggtttctaagggaactgggtcaattcgtatagtaagtcatgctcta 270
|||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 4434 gtgaaaaggcattaggtaactaagggaactgggtcaattcgtatagtaagtcatgctcta 4493
Query: 271 taagatttacgggctgctggaaatgtcaacattctagaacttcgccgcagtcccaaaaaa 330
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4494 gaagatttacgggctgctggaaatgtcaacattctagaacttcgccgcagtcccaaaaaa 4553
Query: 331 aaaaggcgtaatggtaattgaagaagataatcttcttggagatcccttgtacgcaggatt 390
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 4554 aaaaggcgtaatggtaattgaagaagaaaatcttcttggagatcccttgtacgcaggatt 4613
Query: 391 ggacaagaactttaaggaattggagctgcctatttttccttttttttcacctctaagtgg 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4614 ggacaagaactttaaggaattggagctgcctatttttccttttttttcacctctaagtgg 4673
Query: 451 catggaaatcagtgtactgtgagctatttccattacgtgcatacggaaagcggtgccctt 510
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 4674 catggaaatcagtgtactgtgagctattt-cattacgtgcaaacggaaagcggtgccctt 4732
Query: 511 ttcga 515
|||||
Sbjct: 4733 ttcga 4737
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 19,244
Number of Sequences: 1807
Number of extensions: 19244
Number of successful extensions: 381
Number of sequences better than 1.0e-20: 1
length of query: 988
length of database: 10,358,551
effective HSP length: 16
effective length of query: 972
effective length of database: 10,329,639
effective search space: 10040409108
effective search space used: 10040409108
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)