BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC33ZE12RM1.SCF screened BAC_end (952 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig532 1229 0.0 >3x_Contig532 Length = 2251 Score = 1229 bits (620), Expect = 0.0 Identities = 680/695 (97%), Gaps = 4/695 (0%) Strand = Plus / Plus Query: 49 agtttctcctatatcagatatggcagcagcaggaagaggcaggaagagctcgagggtttc 108 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 31 agtttctcctatatcagatatggcagcagcaggaagaggcaggaagagctcgagggtttc 90 Query: 109 tcgctcagctaacaaagcaaccagctataaaatcgatacagacgagttagacattgaaga 168 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 91 tcgctcagctaacaaagcaaccagctataaaatcgatacagacgagttagacattgaaga 150 Query: 169 tgatgaaaaggatcaagagtaccctggaccagccaatgatgatgattacgatgatgaccc 228 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 151 tgatgaaaaggatcaagagtaccctggaccagccaatgatgatgattacgatgatgaccc 210 Query: 229 agatgctgatatcgaaaacgagggtaaaccatctcgttccaagcgcaaggccgcttcgag 288 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 211 agatgctgatatcgaaaacgagggtaaaccatctcgttccaagcgcaaggccgcttcgag 270 Query: 289 cacacctgttccagtggtactagcgacaagaggaaggccttcaaagaggaaaagagaaga 348 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 271 cacacctgttccagtggtactagcgacaagaggaaggccttcaaagaggaaaagagaaga 330 Query: 349 agatttgaacgatcccttaagacagaaactaccgtacccagtggacgaaaacgggtctcc 408 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 331 agatttgaacgatcccttaagacagaaactaccgtacccagtggacgaaaacgggtctcc 390 Query: 409 atacccaattgtgaatgacgagtattcattacctgaggatccagagggtgaaaccaagat 468 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 391 atacccaattgtgaatgacgagtattcattacctgaggatccagagggtgaaaccaagat 450 Query: 469 caccaagaatggtgatcttctagagggaagacaatttgtagtcagaactttcacggtacc 528 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 451 caccaagaatggtgatcttctagagggaagacaatttgtagtcagaactttcacggtacc 510 Query: 529 ttccagaggtgaagttaaatacatggcttctactgagccagcccgtgccggttggttcag 588 ||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||| Sbjct: 511 ttccagaggtgaagttaaatacatgctttctactgagccagcccgtgccgttgggttcag 570 Query: 589 agactcatacttggtcttncagtaccattcaaacctatacaaattgattatcttgcaatc 648 ||||||||||||| |||| ||||||||| |||||||||||||||||||||||| |||||| Sbjct: 571 agactcatacttgttcttccagtaccatccaaacctatacaaattgattatctcgcaatc 630 Query: 649 agagagagacgatctcatcaaaaatggtgtattgccctattcggacagaaaacag-atca 707 ||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||| Sbjct: 631 agagagagacgatctcatcaaaaatggtgtattgccctattcgtacag-aaacagaatca 689 Query: 708 ttggcgctagttactggcaaggatggtgttccgag 742 || |||||||||||| ||||||| |||||||||| Sbjct: 690 tt-gcgctagttact-gcaaggagtgtgttccgag 722 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6130 Number of Sequences: 1807 Number of extensions: 6130 Number of successful extensions: 71 Number of sequences better than 1.0e-20: 1 length of query: 952 length of database: 10,358,551 effective HSP length: 16 effective length of query: 936 effective length of database: 10,329,639 effective search space: 9668542104 effective search space used: 9668542104 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)