BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC33ZF01RM1.SCF screened BAC_end
         (907 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1166                                                        1219   0.0  

>3x_Contig1166 
          Length = 5040

 Score = 1219 bits (615), Expect = 0.0
 Identities = 692/711 (97%), Gaps = 5/711 (0%)
 Strand = Plus / Minus

                                                                        
Query: 48   cttcgagggccgtgatgaatggagtacgtagagttcgtgagtactttttcgaaatacaga 107
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3613 cttcgagggccgtgatgaatggagtacgtagagttcgtgagtactttttcgaaatacaga 3554

                                                                        
Query: 108  ggggaagttcaggcaaacattgctgactggaacgttcccagtgacaattaatgaagggtt 167
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3553 ggggaagttcaggcaaacattgctgactggaacgttcccagtgacaattaatgaagggtt 3494

                                                                        
Query: 168  atgagagggttagaagttgttagcgagcaacatggtggtgtttgagcgcctgtgcttgca 227
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3493 atgagagggttagaagttgttagcgagcaacatggtggtgtttgagcgcctgtgcttgca 3434

                                                                        
Query: 228  tgtagaggatagaggttggagaggacgttgaacgatatgggaagtggggttacttgcggt 287
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3433 tgtagaggatagaggttggagaggacgttgaacgatatgggaagtggggttacttgcggt 3374

                                                                        
Query: 288  atgtgtttcttttgaattgtgctcaagaggatcttatagtcacgtggtgcatattgtgat 347
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 3373 atgtgtttcttttgaattgtgctcaagaggatcttagagtcacgtggtgcatattgtgat 3314

                                                                        
Query: 348  tatgtcatcggattgcaattttgtttcacgtgggccattcttctttgcttgccgggtaat 407
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3313 tatgtcatcggattgcaattttgtttcacgtgggccattcttctttgcttgccgggtaat 3254

                                                                        
Query: 408  gaattggttgtttgttttcttaatattcgcttttttgtcgtttcattttatccgcgcaca 467
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 3253 gaattggttgtttgttttcttaatattcgcttttttgtcgtttcattttagccgcgcaca 3194

                                                                        
Query: 468  tctggcatctatataaacatacagcatggcagtctcagatccttaagatgagcctcatta 527
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 3193 tctggcatctatataaacatacagcatggcagtctcagatccttaagaggagcctcatta 3134

                                                                        
Query: 528  gccacttctccctctgttggaatagttcccactatattggatagacggaggcttaaaaaa 587
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 3133 gccacttctccctctgttggaatagttcccactatattggatagacggaggctaaaaaaa 3074

                                                                        
Query: 588  tggacatagtttttgggagtattggaagtcgatttggaaagcgagctggactcctcgccg 647
            |||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 3073 tggacaaag-ttttgggagtattggaagtcgatttggagagcgagctggactcctcgccg 3015

                                                                        
Query: 648  caatttatcgtaaatcatttccaaattg-aattaattaggtattgaaactgggacgg-ac 705
            || || |||||||||||||||||||||| ||||||| ||||||||||||| |||||| ||
Sbjct: 3014 cagttcatcgtaaatcatttccaaattgaaattaataaggtattgaaacttggacggaac 2955

                                                               
Query: 706  actgaagagtgt-tttactttgttgaacttcctt-ggtttcgaacattcac 754
            ||||| |||||| |||||| |||||||| |||||  |||||||||||||||
Sbjct: 2954 actgaggagtgtatttactctgttgaacatccttctgtttcgaacattcac 2904


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6688
Number of Sequences: 1807
Number of extensions: 6688
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 907
length of database: 10,358,551
effective HSP length: 16
effective length of query: 891
effective length of database: 10,329,639
effective search space: 9203708349
effective search space used: 9203708349
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)