BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC33ZF01RM1.SCF screened BAC_end (907 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1166 1219 0.0 >3x_Contig1166 Length = 5040 Score = 1219 bits (615), Expect = 0.0 Identities = 692/711 (97%), Gaps = 5/711 (0%) Strand = Plus / Minus Query: 48 cttcgagggccgtgatgaatggagtacgtagagttcgtgagtactttttcgaaatacaga 107 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3613 cttcgagggccgtgatgaatggagtacgtagagttcgtgagtactttttcgaaatacaga 3554 Query: 108 ggggaagttcaggcaaacattgctgactggaacgttcccagtgacaattaatgaagggtt 167 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3553 ggggaagttcaggcaaacattgctgactggaacgttcccagtgacaattaatgaagggtt 3494 Query: 168 atgagagggttagaagttgttagcgagcaacatggtggtgtttgagcgcctgtgcttgca 227 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3493 atgagagggttagaagttgttagcgagcaacatggtggtgtttgagcgcctgtgcttgca 3434 Query: 228 tgtagaggatagaggttggagaggacgttgaacgatatgggaagtggggttacttgcggt 287 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3433 tgtagaggatagaggttggagaggacgttgaacgatatgggaagtggggttacttgcggt 3374 Query: 288 atgtgtttcttttgaattgtgctcaagaggatcttatagtcacgtggtgcatattgtgat 347 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 3373 atgtgtttcttttgaattgtgctcaagaggatcttagagtcacgtggtgcatattgtgat 3314 Query: 348 tatgtcatcggattgcaattttgtttcacgtgggccattcttctttgcttgccgggtaat 407 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3313 tatgtcatcggattgcaattttgtttcacgtgggccattcttctttgcttgccgggtaat 3254 Query: 408 gaattggttgtttgttttcttaatattcgcttttttgtcgtttcattttatccgcgcaca 467 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 3253 gaattggttgtttgttttcttaatattcgcttttttgtcgtttcattttagccgcgcaca 3194 Query: 468 tctggcatctatataaacatacagcatggcagtctcagatccttaagatgagcctcatta 527 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 3193 tctggcatctatataaacatacagcatggcagtctcagatccttaagaggagcctcatta 3134 Query: 528 gccacttctccctctgttggaatagttcccactatattggatagacggaggcttaaaaaa 587 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 3133 gccacttctccctctgttggaatagttcccactatattggatagacggaggctaaaaaaa 3074 Query: 588 tggacatagtttttgggagtattggaagtcgatttggaaagcgagctggactcctcgccg 647 |||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 3073 tggacaaag-ttttgggagtattggaagtcgatttggagagcgagctggactcctcgccg 3015 Query: 648 caatttatcgtaaatcatttccaaattg-aattaattaggtattgaaactgggacgg-ac 705 || || |||||||||||||||||||||| ||||||| ||||||||||||| |||||| || Sbjct: 3014 cagttcatcgtaaatcatttccaaattgaaattaataaggtattgaaacttggacggaac 2955 Query: 706 actgaagagtgt-tttactttgttgaacttcctt-ggtttcgaacattcac 754 ||||| |||||| |||||| |||||||| ||||| ||||||||||||||| Sbjct: 2954 actgaggagtgtatttactctgttgaacatccttctgtttcgaacattcac 2904 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6688 Number of Sequences: 1807 Number of extensions: 6688 Number of successful extensions: 51 Number of sequences better than 1.0e-20: 1 length of query: 907 length of database: 10,358,551 effective HSP length: 16 effective length of query: 891 effective length of database: 10,329,639 effective search space: 9203708349 effective search space used: 9203708349 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)