BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZF02FM1.SCF screened BAC_end
(889 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1155 1473 0.0
>3x_Contig1155
Length = 6106
Score = 1473 bits (743), Expect = 0.0
Identities = 789/802 (98%), Gaps = 2/802 (0%)
Strand = Plus / Plus
Query: 86 ccaaaactaacttatgatgcaaaccgaattccttgccttggaaggtatgcaaacatttta 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 ccaaaactaacttatgatgcaaaccgaattccttgccttggaaggtatgcaaacatttta 808
Query: 146 ggaatttatcataattgacaaatccgacgacagcttcatagtttgtcgccttaaccatgt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 ggaatttatcataattgacaaatccgacgacagcttcatagtttgtcgccttaaccatgt 868
Query: 206 atttctcaattgagccgttggttttttcagcttcttgtgtctcttcaccattttcctgct 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 atttctcaattgagccgttggttttttcagcttcttgtgtctcttcaccattttcctgct 928
Query: 266 gctctattttctctgcctcctgcgtttcttgaacgtcctcaaccttttctgtatcccttt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 929 gctctattttctctgcctcctgcgtttcttgaacgtcctcaaccttttctgtatcccttt 988
Query: 326 cttttgtctctggtgtctttgattctccctttgtactctgctcagaaagctcaggtttaa 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 989 cttttgtctctggtgtctttgattctccctttgtactctgctcagaaagctcaggtttaa 1048
Query: 386 cctcttcttttccatcttctttcgtctcttgtgaaaggcccacacttaaaggagctgagt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1049 cctcttcttttccatcttctttcgtctcttgtgaaaggcccacacttaaaggagctgagt 1108
Query: 446 tttcatcgtcatctttactgggaatttctttaattggttccttggtatcgtctcttgtcg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1109 tttcatcgtcatctttactgggaatttctttaattggttccttggtatcgtctcttgtcg 1168
Query: 506 tttccgtgactcctttagttttgtccgaaccttctgactttttcgatatagtgtctgttt 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1169 tttccgtgactcctttagttttgtccgaaccttctgactttttcgatatagtgtctgttt 1228
Query: 566 taatctctgaaggcgcttgcgaaacgataacttcctcgttctcgccctgaacaagttgaa 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1229 taatctctgaaggcgcttgcgaaacgataacttcctcgttctcgccctgaacaagttgaa 1288
Query: 626 tttcgacatctaactcttctgactcgtagaccccaacgtaaaattcgaaagatgacgtat 685
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1289 tttcgacatctaactctcctgactcgtagaccccaacgtaaaattcgaaagatgacgtat 1348
Query: 686 tctcgaataattcagggcaatttgatttaatgaagtctttttacattgtccattttagct 745
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1349 tctcgaataattcagggcaatttgatttaatgaagtcttttaacattgtccattttagct 1408
Query: 746 tcccatacgtttctgggtccgttgtttttacaatgaggcttcgtacactactggcacgag 805
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1409 tcccatacgtttctggttccgttgtttttacaatgaggctcggtacactactggcacgag 1468
Query: 806 ttacatgttgccctgcgatttcctgtagtcttgaactttactatttcatccc-atgaaga 864
|||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 1469 ttacatgttgccctgcga-ttcctgtagtcttgaacttaactatttcatcccaatgaaga 1527
Query: 865 acaggcggnaagttattaaatt 886
||||| |||||| ||||||
Sbjct: 1528 cagggcggaaagttagtaaatt 1549
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5990
Number of Sequences: 1807
Number of extensions: 5990
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 889
length of database: 10,358,551
effective HSP length: 16
effective length of query: 873
effective length of database: 10,329,639
effective search space: 9017774847
effective search space used: 9017774847
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)