BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZF02RM1.SCF screened BAC_end
(889 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1237 1277 0.0
>3x_Contig1237
Length = 6632
Score = 1277 bits (644), Expect = 0.0
Identities = 716/732 (97%), Gaps = 6/732 (0%)
Strand = Plus / Minus
Query: 48 aactccgttgcaaaactataacgacacacattcagacgatgatgaagaacaacaccgtca 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3984 aactccgttgcaaaactataacgacacacattcagacgatgatgaagaacaacaccgtca 3925
Query: 108 agataaaagaatgtcttacgacccaagagattctgttggatcaccaactactaccttatt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3924 agataaaagaatgtcttacgacccaagagattctgttggatcaccaactactaccttatt 3865
Query: 168 cgaccctcatggtaaacatcatgatgatctaagaaatggcaagtatcgtgatgactcaaa 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3864 cgaccctcatggtaaacatcatgatgatctaagaaatggcaagtatcgtgatgactcaaa 3805
Query: 228 ctccttcgatatgggagaggaagacttaagtaagaacctggatttggaacaaaggctatt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3804 ctccttcgatatgggagaggaagacttaagtaagaacctggatttggaacaaaggctatt 3745
Query: 288 ggaatctgaagggttccagttgagacatcaaagtaaatcatcgatcaaaagagatactta 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3744 ggaatctgaagggttccagttgagacatcaaagtaaatcatcgatcaaaagagatactta 3685
Query: 348 cttggccaaattgttcaaatcctctgctctacaatcagtggcaagaaacttttccagagt 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3684 cttggccaaattgttcaaatcctctgctctacaatcagtggcaagaaacttttccagagt 3625
Query: 408 tttctccttcttattccattgtacaaattacccaatgttattattcttttttgtttatat 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3624 tttctccttcttattccattgtacaaattacccaatgttattattcttttttgtttatat 3565
Query: 468 cccaactggtctcgcagtaggtaacttgttgggtgaaggaaatagagttttcaatttgtt 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3564 cccaactggtctcgcagtaggtaacttgttgggtgaaggaaatagagttttcaatttgtt 3505
Query: 528 agcacattggattaaaggtggtgtctttgtgtccttgggtattttgtctttagctcgtta 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3504 agcacattggattaaaggtggtgtctttgtgtccttgggtattttgtctttagctcgtta 3445
Query: 588 ctgtggttttggtgtcaacaatggttgggcatggaaccagattattattttcaag-atca 646
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||
Sbjct: 3444 ctgtggttttggtgtcaacaatggttgggcatggaacaagattattattttcaagaacca 3385
Query: 647 aatagattcccattcattatgggtcaaaa-tgcgccccaa-gccgcatc-caatggattt 703
|||||||||| ||||||||||| |||||| |||||||||| || ||||| ||||||| ||
Sbjct: 3384 aatagattccaattcattatggttcaaaattgcgccccaaggcggcatcacaatggaatt 3325
Query: 704 ttttgaatc-ttcttgattgcattttacgcctgtccaaacgtatttttggagc-tttggc 761
||||||||| ||||||||||||||||||| |||| |||||||||||||||||| |||| |
Sbjct: 3324 ttttgaatctttcttgattgcattttacggctgtacaaacgtatttttggagcatttgtc 3265
Query: 762 aaatccaagtgg 773
||||||| ||||
Sbjct: 3264 aaatccaggtgg 3253
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7435
Number of Sequences: 1807
Number of extensions: 7435
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 889
length of database: 10,358,551
effective HSP length: 16
effective length of query: 873
effective length of database: 10,329,639
effective search space: 9017774847
effective search space used: 9017774847
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)