BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZF03FM1.SCF screened BAC_end
(949 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1145 1526 0.0
>3x_Contig1145
Length = 5226
Score = 1526 bits (770), Expect = 0.0
Identities = 839/853 (98%), Gaps = 7/853 (0%)
Strand = Plus / Minus
Query: 86 atctacatgtcagaaccagtgatggagaatatggcacctgaagatgtggtaaaacttgag 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4263 atctacatgtcagaaccagtgatggagaatatggcacctgaagatgtggtaaaacttgag 4204
Query: 146 aaagaagaacatattgtaccggatattggcgtctcttcgatttctaccactgaacccctg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4203 aaagaagaacatattgtaccggatattggcgtctcttcgatttctaccactgaacccctg 4144
Query: 206 tctccatcgggtataccaagggaatcatctggaactgttacctctgcaactgcagctaca 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4143 tctccatcgggtataccaagggaatcatctggaactgttacctctgcaactgcagctaca 4084
Query: 266 acagaaagagaagtatcacccaagaaggaactacaaattgatcatgatcgtgttgatcca 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4083 acagaaagagaagtatcacccaagaaggaactacaaattgatcatgatcgtgttgatcca 4024
Query: 326 gtagcgatgatcggtgggtcaaccactagaagatatttgaatgaacatgtaacaaaacat 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4023 gtagcgatgatcggtgggtcaaccactagaagatatttgaatgaacatgtaacaaaacat 3964
Query: 386 ttattggaaggaatgaaactgatagccagagaaaagcccgaggatccacttcgagtatta 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3963 ttattggaaggaatgaaactgatagccagagaaaagcccgaggatccacttcgagtatta 3904
Query: 446 ggccagttcttgattgatgcaagcgaaatgaaccagaagccttcatcgtagatatgaatt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3903 ggccagttcttgattgatgcaagcgaaatgaaccagaagccttcatcgtagatatgaatt 3844
Query: 506 tacgactttcttaaactaaagacatctgtattattattattattttatatatgtatgttt 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3843 tacgactttcttaaactaaagacatctgtattattattattattttatatatgtatgttt 3784
Query: 566 tccttcaatgtccagttcacttatagatatctacatgaactaaaacttctcctcttcgag 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3783 tccttcaatgtccagttcacttatagatatctacatgaactaaaacttctcctcttcgag 3724
Query: 626 tatttctgatggcttatttaaaatcttcaaaccataaccgcataaaatgcttagaagccc 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3723 tatttctgatggcttatttaaaatcttcaaaccataaccgcataaaatgcttagaagccc 3664
Query: 686 gagtctccagcctcgccatagttcactaattctgtcgcactgcttgaataccgtcaagta 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 3663 gagtctccagcctcgccatagttcactaattctgtcgcactgcttgaataccgtc-agta 3605
Query: 746 gatggattggtactccctaggttttatgatttaaca-ttcanattgtacttggaatgggt 804
|||||||||||||||||| |||||||||| |||||| |||| ||||||||||||||||||
Sbjct: 3604 gatggattggtactcccttggttttatga-ttaacatttcagattgtacttggaatgggt 3546
Query: 805 tttctgtgaacaagaacttcacttgactccttctcaataaattctcaattggtagcttta 864
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 3545 tttctgtgaacaagaacttcacttgactccttctcaatagattctcaattggtagcttta 3486
Query: 865 cgaaaagttcac-aactttactgcagaacttt-atgtg-ttggacagaatc-cattatgg 920
|||| ||||||| ||||||||||||||||||| ||||| ||| |||||||| ||||| |
Sbjct: 3485 cgaagagttcacaaactttactgcagaactttaatgtgtttgtacagaatcacattagtg 3426
Query: 921 aatttgtcaacat 933
|||||||||||||
Sbjct: 3425 aatttgtcaacat 3413
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7639
Number of Sequences: 1807
Number of extensions: 7639
Number of successful extensions: 231
Number of sequences better than 1.0e-20: 1
length of query: 949
length of database: 10,358,551
effective HSP length: 16
effective length of query: 933
effective length of database: 10,329,639
effective search space: 9637553187
effective search space used: 9637553187
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)