BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZF03RM1.SCF screened BAC_end
(951 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1509 1392 0.0
>3x_Contig1509
Length = 8584
Score = 1392 bits (702), Expect = 0.0
Identities = 819/853 (96%), Gaps = 5/853 (0%)
Strand = Plus / Plus
Query: 44 gcttattcactcttcctttggagattgtcactaagttcaataattatgtgtaatcatcgt 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7057 gcttattcactcttcctttggagattgtcactaagttcaataattatgtgtaatcatcgt 7116
Query: 104 ttaatatgtagaaataaaatatctatacttcacttttttttcatgctcgctgtttgtctt 163
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 7117 ttaatatgtagaaataaaatatctatacttcacttttttttcaagctcgctgtttgtctt 7176
Query: 164 cattcgatattatctttgatgtgcaatatcgatttcaatgaactagagtcgattagctgt 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7177 cattcgatattatctttgatgtgcaatatcgatttcaatgaactagagtcgattagctgt 7236
Query: 224 aagagtttggatcgcttttcttctgttaaatcaggccaagttttcaaaattaattcgaga 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7237 aagagtttggatcgcttttcttctgttaaatcaggccaagttttcaaaattaattcgaga 7296
Query: 284 ttttgagccagttctttccattccatttggatctcatctcgccattgtctcagttccaca 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7297 ttttgagccagttctttccattccatttggatctcatctcgccattgtctcagttccaca 7356
Query: 344 acggataacatggaattgatatcctggtaattaacatcagtatttgttgcacttcgtata 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7357 acggataacatggaattgatatcctggtaattaacatcagtatttgttgcacttcgtata 7416
Query: 404 agctcaatggctctgcatttttcgattagtcttgtccttaaagagtcatacttatgtagg 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7417 agctcaatggctctgcatttttcgattagtcttgtccttaaagagtcatacttatgtagg 7476
Query: 464 agactttgatccatttcattttcattatcgataagtctgaatctaggtaggttggctaga 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7477 agactttgatccatttcattttcattatcgataagtctgaatctaggtaggttggctaga 7536
Query: 524 tcactgtgtaacttgggaaaactaactccatctncgttcaacatatttcccatatctaga 583
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 7537 tcactgtgtaacttgggaaaactaactccatctccgttcaacatatttcccaaatctaga 7596
Query: 584 cgttgntaatcaccgatatttgtcaagacatcatagtatttcatttcgtttccaatcatc 643
||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 7597 cgttgtaaatcaccgatatttgtcaagacatcatagta-ttcatttcgtttccaatcatc 7655
Query: 644 tatatattcgactagctctttctttcatatatcgtaggtcacatcatacctcagtgcatt 703
|||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||
Sbjct: 7656 tatatattcgactagctctttcttcaatatatcgtagttcacatcatacttcagtgcatt 7715
Query: 704 gtccaatcttgcttgttgttcatcattcaaagaaggaatttggggtc-tatgttntgccg 762
|||||||||||||||||||||||||||||||||||||| || |||| |||||| |||||
Sbjct: 7716 gtccaatcttgcttgttgttcatcattcaaagaaggaaattttggtcttatgttttgccg 7775
Query: 763 taccagttgaatgatctctgattccagatccatactgttttgcattttc-tgtccagttt 821
||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||
Sbjct: 7776 taccagttgaatgatctctgattccagatccatactg-tttgcagtttcttgtccagtta 7834
Query: 822 actgtatcgngctccgnttggttggttggtttgtttatttatgccggaatttggttcttg 881
||||||| |||||| || ||| ||| |||||||||| ||||| | |||| || ||
Sbjct: 7835 cgtgtatcgtgctccgttt-gtttgtttgtttgtttatctatgcggttattttgtctctg 7893
Query: 882 tcatcgttccaaa 894
|||||||||||||
Sbjct: 7894 tcatcgttccaaa 7906
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7689
Number of Sequences: 1807
Number of extensions: 7689
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 951
length of database: 10,358,551
effective HSP length: 16
effective length of query: 935
effective length of database: 10,329,639
effective search space: 9658212465
effective search space used: 9658212465
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)