BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZF04FM1.SCF screened BAC_end
(960 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig283 807 0.0
3x_Contig1310 517 e-146
>3x_Contig283
Length = 1176
Score = 807 bits (407), Expect = 0.0
Identities = 465/475 (97%), Gaps = 7/475 (1%)
Strand = Plus / Minus
Query: 323 aatgatgctgatatgttacaaatcgaagtgaaaccagaacctgcagacgatactgaaatc 382
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1176 aatgatgatgatatgttacaaatcgaagtgaaac-agaacctgcagacgatactgaaatc 1118
Query: 383 tttttgaaattcgatgaagatgatgaaccaaatagagacttcatcaaaaatctttcctct 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1117 tttttgaaattcgatgaagatgatgaaccaaatagagacttcatcaaaaatctttcctct 1058
Query: 443 tcaaggatggttcagacctcttctttgagttctcgtgcaagtttgacagatgaagacgat 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1057 tcaaggatggttcagacctcttctttgagttctcgtgcaagtttgacagatgaagacgat 998
Query: 503 ctgttactatcatcatctaccccaagttctttattctctaccgacttaaatcgtaccgtg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 997 ctgttactatcatcatctaccccaagttctttattctctaccgacttaaatcgtaccgtg 938
Query: 563 agcaatcaacttctttccaattcatctaccttgacgaatacaggatcaagtccaagtagt 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 937 agcaatcaacttctttccaattcatctaccttgacgaatacaggatcaagtccaagtagt 878
Query: 623 agccacacatcaaataagagcttaccaaattctcagttctctgatactattgaagctatg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 agccacacatcaaataagagcttaccaaattctcagttctctgatactattgaagctatg 818
Query: 683 aaattcttggatggttatgagcaaatggagtttctatttcaaaatac-aactttcgactt 741
|||||||||||||||||||||||||||||| ||||| ||| |||||| ||||||||||||
Sbjct: 817 aaattcttggatggttatgagcaaatggag-ttcta-ttccaaatacaaactttcgactt 760
Query: 742 cacatttctcaagaaactttgaaatctatacaaaaagcttaagggtagatcacca 796
|||| |||||||||| ||||||||||||||| |||||||||| ||||||||||||
Sbjct: 759 caca-ttctcaagaacctttgaaatctatac-aaaagcttaa-ggtagatcacca 708
>3x_Contig1310
Length = 7790
Score = 517 bits (261), Expect = e-146
Identities = 261/261 (100%)
Strand = Plus / Minus
Query: 86 aagaaggagcttaccgatctagtgggtaacttacaggaattgaaacgtcagttccctatc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagaaggagcttaccgatctagtgggtaacttacaggaattgaaacgtcagttccctatc 202
Query: 146 gtaccagaagaatcaaattctaaatctccacataccatagtaccaagtgtcaacagcagt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtaccagaagaatcaaattctaaatctccacataccatagtaccaagtgtcaacagcagt 142
Query: 206 gttccaatgcaacagaagattcttccaaaaccaatgacaaataaatcgtaccatgagcca 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 gttccaatgcaacagaagattcttccaaaaccaatgacaaataaatcgtaccatgagcca 82
Query: 266 gtacatgtgaagcaagaacatactgagagattgcctcgtaaaagatctatcattgacaat 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81 gtacatgtgaagcaagaacatactgagagattgcctcgtaaaagatctatcattgacaat 22
Query: 326 gatgctgatatgttacaaatc 346
|||||||||||||||||||||
Sbjct: 21 gatgctgatatgttacaaatc 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8357
Number of Sequences: 1807
Number of extensions: 8357
Number of successful extensions: 78
Number of sequences better than 1.0e-20: 2
length of query: 960
length of database: 10,358,551
effective HSP length: 16
effective length of query: 944
effective length of database: 10,329,639
effective search space: 9751179216
effective search space used: 9751179216
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)