BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZF04RM1.SCF screened BAC_end
(957 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig979 868 0.0
3x_Contig409 276 8e-74
>3x_Contig979
Length = 3913
Score = 868 bits (438), Expect = 0.0
Identities = 548/574 (95%), Gaps = 8/574 (1%)
Strand = Plus / Plus
Query: 204 gctttgtgccaaatgctccacatatggtcgctacagggtcgtacgatggagtagttagat 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gctttgtgccaaatgctccacatatggtcgctacagggtcgtacgatggagtagttagat 60
Query: 264 tgtacgatattagaacgaaatcagataaaccacagacaactttggatcacggtcttcctg 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgtacgatattagaacgaaatcagataaaccacagacaactttggatcacggtcttcctg 120
Query: 324 tggaagatatcacagccatatctcctactcagcttgcatcgtgtggtggtaacgggttca 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tggaagatatcacagccatatctcctactcagcttgcatcgtgtggtggtaacgggttca 180
Query: 384 aagtatgggacttgactagcgatagagccctttgtgaacgtcaaaatttcgcaaagacgg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aagtatgggacttgactagcgatagagccctttgtgaacgtcaaaatttcgcaaagacgg 240
Query: 444 tcacctgtttgaattacacaaatatgggagaagaatcaccaatgagttccgtactagttg 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tcacctgtttgaattacacaaatatgggagaagaatcaccaatgagttccgtactagttg 300
Query: 504 catcctcgcttgatggtcatgttaagatcttttccccgttggagaactt-caatttcagt 562
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 301 catcctcgcttgatggtcatgttaagatcttttccccgttggagaacttccaattcaagt 360
Query: 563 ttggcttggaag-ttatcaacgctgtgcttagttgtgcagtctcaccatgcgatgcgcat 621
||||| |||||| ||| |||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 361 ttggc-tggaagtttagcaacgctgtgctaagttgtgcagtctcaccaggcgatgcgcaa 419
Query: 622 agtaataaacatttcgttgcaagtttattctcaggaattctagccatcaagacgatgaat 681
|||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||
Sbjct: 420 ggtaataaacatttcgttgcaggtttatcctcaggaattctagccatcaagacgaagaag 479
Query: 682 aagtccaaaaagatttaccctcgctgatgtctcttaatttggaagattttaccatttcca 741
||||||||||||| ||| ||||||||||||||| | ||||||| || ||||||| || ||
Sbjct: 480 aagtccaaaaaga-ttaacctcgctgatgtctc-tgatttggagga-tttacca-ttaca 535
Query: 742 ccagccagaaaatgtctgcgaaatccaacaattt 775
|||| ||| || |||||||||||||||||||||
Sbjct: 536 acagcaagagaa-gtctgcgaaatccaacaattt 568
>3x_Contig409
Length = 2404
Score = 276 bits (139), Expect = 8e-74
Identities = 139/139 (100%)
Strand = Plus / Plus
Query: 48 cgtcgcatcctacgcatgtgacgaagtttcacgatcaggataacaagactttggtgacgg 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2266 cgtcgcatcctacgcatgtgacgaagtttcacgatcaggataacaagactttggtgacgg 2325
Query: 108 caaacgacgatagagtagtgagactatgggatgtttctcatgcttatgaacccactttac 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2326 caaacgacgatagagtagtgagactatgggatgtttctcatgcttatgaacccactttac 2385
Query: 168 agttaactggagcatctga 186
|||||||||||||||||||
Sbjct: 2386 agttaactggagcatctga 2404
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6159
Number of Sequences: 1807
Number of extensions: 6159
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 2
length of query: 957
length of database: 10,358,551
effective HSP length: 16
effective length of query: 941
effective length of database: 10,329,639
effective search space: 9720190299
effective search space used: 9720190299
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)