BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZF05RM1.SCF screened BAC_end
(903 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1633 1409 0.0
>3x_Contig1633
Length = 12594
Score = 1409 bits (711), Expect = 0.0
Identities = 831/862 (96%), Gaps = 10/862 (1%)
Strand = Plus / Minus
Query: 46 cctgagaccaaa-caatggtattgatcccctatgttgaacaaaagaagtgtatttatcac 104
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9543 cctgagaccaaaacaatggtattgatcccctatgttgaacaaaagaagtgtatttatcac 9484
Query: 105 tatcaaaaaaacctcttgcaggggagtgaaatgatgtaaggctcatgtcagctacaatct 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9483 tatcaaaaaaacctcttgcaggggagtgaaatgatgtaaggctcatgtcagctacaatct 9424
Query: 165 gctcggtttccacttcatttgccacataacccttattgttaacacctcttttcaaaaatc 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9423 gctcggtttccacttcatttgccacataacccttattgttaacacctcttttcaaaaatc 9364
Query: 225 tagctcctgcaaaataatgggatcttctaccaattagtgtgatataaatactcttaccga 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9363 tagctcctgcaaaataatgggatcttctaccaattagtgtgatataaatactcttaccga 9304
Query: 285 atagtgaaacattgacttggtcaatgaacccatgaataatgggttgaaaccaatcatata 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9303 atagtgaaacattgacttggtcaatgaacccatgaataatgggttgaaaccaatcatata 9244
Query: 345 cggtatcaatacatgagaaaatgggatcaagcaagtatgaattccacataaacatttcgt 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9243 cggtatcaatacatgagaaaatgggatcaagcaagtatgaattccacataaacatttcgt 9184
Query: 405 tataatcaggaatgccaggcggcacttcgatatctgacctcccaacggacagaaacttct 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9183 tataatcaggaatgccaggcggcacttcgatatctgacctcccaacggacagaaacttct 9124
Query: 465 gtctcagtatgtttgtttgtaatgtattagtaatatcaaaagtgtaactgaaataaaagg 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9123 gtctcagtatgtttgtttgtaatgtattagtaatatcaaaagtgtaactgaaataaaagg 9064
Query: 525 tttttgataatttaagattctggaatgattgtataaatcgaagttcggtggaatcccgtt 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9063 tttttgataatttaagattctggaatgattgtataaatcgaagttcggtggaatcccgtt 9004
Query: 585 tcttcgttgactttgttatcggaactaattctgtatcgtcgatatgatanatagagtgac 644
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 9003 tcttcgttgactttgttatcggaactaattctgtatcgtcgatatgataaatagagtgac 8944
Query: 645 ctccgagaacggc-acctgactcatttcagttattaccaccaaataataacatgctgtga 703
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8943 ctccgagaacggcaacctgactcatttcagttattaccaccaaataataacatgctgtga 8884
Query: 704 accctaaattactcc--ataaaccatagcctgtgagtttncttcgttaaagcatcatcgt 761
||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 8883 acc--taattactcccaataaaccatagcctgtgagttt-cttcgttaaagcatcatcgt 8827
Query: 762 ctggcctcttcaattttacgaatgactttcataacctncgttctcatgaaaattaccttg 821
|| ||||||||||||||||||| |||| ||| |||| |||||||||||| ||| |||
Sbjct: 8826 ct-gcctcttcaattttacgaagaacttccatcacctcgtttctcatgaaaaatacattg 8768
Query: 822 nctttccgcatatttcaaattggtctcttcaccattgaaatcattttcaagttttcgaaa 881
| ||||||| ||||||||| |||||||||||||| |||| |||||||| |||||||
Sbjct: 8767 tc-ttccgcaatattcaaattgtcctcttcaccattgagatcaatttcaagtattcgaaa 8709
Query: 882 cattgggctctcgtttattact 903
|||| | |||||||||||||||
Sbjct: 8708 catt-gtctctcgtttattact 8688
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6635
Number of Sequences: 1807
Number of extensions: 6635
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 903
length of database: 10,358,551
effective HSP length: 16
effective length of query: 887
effective length of database: 10,329,639
effective search space: 9162389793
effective search space used: 9162389793
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)