BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZF06FM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig660 1168 0.0
3x_Contig496 111 3e-24
>3x_Contig660
Length = 1656
Score = 1168 bits (589), Expect = 0.0
Identities = 661/677 (97%), Gaps = 7/677 (1%)
Strand = Plus / Minus
Query: 182 acgtctttaatttttttaaatatacaggattttaaaagtttataaaattatgtccaatgc 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1646 acgtctttaatttttttaaatatacaggattttaaaagtttataaaattatgtccaatgc 1587
Query: 242 acaacaaacattgtcttttcaccaacaacaatgaaaagaccgtctgttagatgcgtttcc 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1586 acaacaaacattgtcttttcaccaacaacaatgaaaagaccgtctgttagatgcgtttcc 1527
Query: 302 taaatttaataatgtacaataattataatg-acaatagtaatgtgcgatatactttagtt 360
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1526 taaatttaataatgtacaataattataatgcacaatagtaatgtgcgatatactttagtt 1467
Query: 361 ttactcggtgtccgccgatttgttctttttaacatattcagcagccttggctttaacata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1466 ttactcggtgtccgccgatttgttctttttaacatattcagcagccttggctttaacata 1407
Query: 421 gtcgaccagtttttgatcgtccttctgttcttcaaattgtaaccacttgttgaaaaagaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1406 gtcgaccagtttttgatcgtccttctgttcttcaaattgtaaccacttgttgaaaaagaa 1347
Query: 481 ctttgcttgttttctagtgatctttttagtgataactctttcaaagagatcctcagcctt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1346 ctttgcttgttttctagtgatctttttagtgataactctttcaaagagatcctcagcctt 1287
Query: 541 ggatttttcaccatgtttaaatttcttgatcaatgtacacatttcatagatcgactctct 600
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1286 ggatttttcaccatgttt-aatttcttgatcaatgtacacattccatagatcgactctct 1228
Query: 601 ttggagcatctgccaaaagaccttcanataatgatcgaccttgttctaggtcacctttac 660
|||||||||||||||||||||||||| |||| || |||||||||||| ||||||||||||
Sbjct: 1227 ttggagcatctgccaaaagaccttcaaataaggaacgaccttgttctgggtcacctttac 1168
Query: 661 tgaattctaattgtgcanactttctgactacttcgatatggttacgtgttggtagggatt 720
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1167 tgaattctaattgtgcaaactttctgactacttcgatatggttacgtgttggtagggatt 1108
Query: 721 ttaaagaatttcctagaacttcatgagcctngtctattaaattgttgtcaatc-aaaatt 779
||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct: 1107 ttaaagagtttcctagaacttcatgagcctcgtctattaaattgttgtcaatcaaaaatt 1048
Query: 780 ca-cccaagcgacccatattgatacc-tttcacttccgaa-ttctttgcagttattttg- 835
|| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 1047 caccccaagcgacccatattgataccttttcacttccgaatttctttgcagttattttga 988
Query: 836 aaagttncttggccttt 852
|||||| ||||||||||
Sbjct: 987 aaagttccttggccttt 971
>3x_Contig496
Length = 2617
Score = 111 bits (56), Expect = 3e-24
Identities = 110/128 (85%)
Strand = Plus / Plus
Query: 100 ctctcactggagacccttccatagttgcttgcaatacttttgtccttttgtgtcatggtt 159
||||| |||| | ||||||||| ||||||||| | ||||||||||||||||||||||||
Sbjct: 2488 ctctccctggcgccccttccatcgttgcttgccctccttttgtccttttgtgtcatggtt 2547
Query: 160 agaacctgctatgactattgtaacgtctttaatttttttaaatatacaggattttaaaag 219
| |||||| || || |||| ||||||||||||| ||||||||||||||| |||||||
Sbjct: 2548 cgcccctgctctgtcttttgtcccgtctttaattttgttaaatatacaggatgttaaaag 2607
Query: 220 tttataaa 227
|| |||||
Sbjct: 2608 ttgataaa 2615
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7851
Number of Sequences: 1807
Number of extensions: 7851
Number of successful extensions: 65
Number of sequences better than 1.0e-20: 2
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)