BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC33ZF06RM1.SCF screened BAC_end
         (940 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1540                                                        1398   0.0  

>3x_Contig1540 
          Length = 9505

 Score = 1398 bits (705), Expect = 0.0
 Identities = 779/799 (97%), Gaps = 6/799 (0%)
 Strand = Plus / Minus

                                                                        
Query: 43   cttttacaaaggcgttccaagagcgtagagcagcagttgatgatgagacattagataaat 102
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5947 cttttacaaaggcgttccaagagcgtagagcagcagttgatgatgagacattagataaat 5888

                                                                        
Query: 103  tcatgaaaccacacaaactagtttggggccaacaagaaagactggtcccagtcaaaccaa 162
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5887 tcatgaaaccacacaaactagtttggggccaacaagaaagactggtcccagtcaaaccaa 5828

                                                                        
Query: 163  aggaagataagaagaagaacactgaagcctgaaagattgatcacttagcatgagtaccga 222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5827 aggaagataagaagaagaacactgaagcctgaaagattgatcacttagcatgagtaccga 5768

                                                                        
Query: 223  acgcttgccttgaaatttaacccattaaaggttgccatatttgttagtgcagatataaat 282
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5767 acgcttgccttgaaatttaacccattaaaggttgccatatttgttagtgcagatataaat 5708

                                                                        
Query: 283  attgactcttagctgaaggtatgcgtaaagagaaggaaagaagcaaaggcatttctatat 342
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5707 attgactcttagctgaaggtatgcgtaaagagaaggaaagaagcaaaggcatttctatat 5648

                                                                        
Query: 343  acagagtaataagtatcttttatctctagtatttaattcgtttttgtatcatttgttaaa 402
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5647 acagagtaataagtatcttttatctctagtatttaattcgtttttgtatcatttgttaaa 5588

                                                                        
Query: 403  gtcattatagattataattcagagccggccagatgtttgatagtataatcgaagataaag 462
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5587 gtcattatagattataattcagagccggccagatgtttgatagtataatcgaagataaag 5528

                                                                        
Query: 463  gtcgaacagtaaaaccaacaggccgagattattatgttactggaacagaaattattgtat 522
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5527 gtcgaacagtaaaaccaacaggccgagattattatgttactggaacagaaattattgtat 5468

                                                                        
Query: 523  tcattgatgnctttgaatgtaatccaccanagcttcaagtggtataattgaaatatcgaa 582
            |||||||||  |||||||||||||||||| |||||||||||  |||||||||||||||||
Sbjct: 5467 tcattgatgcttttgaatgtaatccaccaaagcttcaagtgtaataattgaaatatcgaa 5408

                                                                        
Query: 583  ttctttgccaaattcgacacagtcatccaatctcatcatatctncatcttcatctttgac 642
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 5407 ttctttgccaaattcgacacagtcatccaatctcatcatatctccatcttcatctttgac 5348

                                                                        
Query: 643  gagttcaccaatgacaccgactggtgggagtgatgcaagcttgcattagtcgacagctgc 702
            ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 5347 gagttcaccaatgacaccgactggtgggagtgatgcaagcttgcataggtcgacagctgc 5288

                                                                        
Query: 703  ttcagtgtgaccacgtctggccagaacaccgncttctttggctctt-atgtcaacacatg 761
            ||||||||||||||||||||||||||||||| |||||||||||||| ||| || ||||||
Sbjct: 5287 ttcagtgtgaccacgtctggccagaacaccgccttctttggctcttaatggcaccacatg 5228

                                                                        
Query: 762  accagncttc-agtattcaata--cgtagtagtcttgtcagcaag-ttggaacacg-taa 816
            ||||| |||| |||| ||||||   |||||||||||||||||||| |||||||||| |||
Sbjct: 5227 accaggcttcaagtaatcaatagcggtagtagtcttgtcagcaagtttggaacacgttaa 5168

                               
Query: 817  tgcacgatcatgtgctgaa 835
            |||||||||||||||||||
Sbjct: 5167 tgcacgatcatgtgctgaa 5149


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7033
Number of Sequences: 1807
Number of extensions: 7033
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)