BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZF07FM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1072 1455 0.0
>3x_Contig1072
Length = 5702
Score = 1455 bits (734), Expect = 0.0
Identities = 821/842 (97%), Gaps = 6/842 (0%)
Strand = Plus / Minus
Query: 86 aaagcaatgtgggaaaatgtcattattgttggagggacatcacatataaaagggttcagg 145
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 2661 aaagcaatgtgggaaaatgtcattattgtgggagggacatcacatataaaagggttcagg 2602
Query: 146 gaagctcttctatcacagctgctaaaagaccatatagttagtgaaccagaagaggaactg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2601 gaagctcttctatcacagctgctaaaagaccatatagttagtgaaccagaagaggaactg 2542
Query: 206 tataaaagagaggtggatgctgcggctaaattagattctaaacagaagaaaattgggaag 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2541 tataaaagagaggtggatgctgcggctaaattagattctaaacagaagaaaattgggaag 2482
Query: 266 gtttccactgctccaatcttaaatcagattgaatatgtgcagccaccaactaccatcatg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2481 gtttccactgctccaatcttaaatcagattgaatatgtgcagccaccaactaccatcatg 2422
Query: 326 acaccaaagttccctgaatatttctcggaatggaagaagattggtttcgctgatattacc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2421 acaccaaagttccctgaatatttctcggaatggaagaagattggtttcgctgatattacc 2362
Query: 386 ttcttaggcgcccagatcttaacaaagcaagtgtttgggcattctaacaattcattctat 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2361 ttcttaggcgcccagatcttaacaaagcaagtgtttgggcattctaacaattcattctat 2302
Query: 446 gtcacaagggagaagtatgacgaactaggcccagaggccatctgggaggtttctttctaa 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2301 gtcacaagggagaagtatgacgaactaggcccagaggccatctgggaggtttctttctaa 2242
Query: 506 ataattctagtactttttcaatatataaacgtatacagatatccattgtaatttcaatca 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2241 ataattctagtactttttcaatatataaacgtatacagatatccattgtaatttcaatca 2182
Query: 566 gcaaatgcagttcagagtaccgtacatttagaaagtgcccatcaaacttctctagagcat 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2181 gcaaatgcagttcagagtaccgtacatttagaaagtgcccatcaaacttctctagagcat 2122
Query: 626 tgagctatgactcttactagaattttgatcatttgtttgttctaaagatttgctcgctcc 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2121 tgagctatgactcttactagaattttgatcatttgtttgttctaaagatttgctcgctcc 2062
Query: 686 gggaaagcattctagatccacttgatattggtcttgtacccagcttcccgtttattgttt 745
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 2061 gggaaagcattctagatccacttgatattggtcttgtacccagcttcccg-ttattg-tt 2004
Query: 746 ttggttttgtctctgggaagaaaaactggaccttcttttagtgaggaaaggagtttttgt 805
||| ||||||||||| || | |||||||||||||||||||||||||||||||||||||||
Sbjct: 2003 ttgtttttgtctctgtgaggtaaaactggaccttcttttagtgaggaaaggagtttttgt 1944
Query: 806 aggtttatacccataaagttgggtttcggcttcctgctcaactagtaatgcc-ctttgtt 864
|| ||||||||||| |||||| |||||||||||||||||| ||||||||||| |||||||
Sbjct: 1943 agttttatacccattaagttgtgtttcggcttcctgctcagctagtaatgccgctttgtt 1884
Query: 865 agc-atgggattgaatggagtttcttttttag-gaatctttca-ttttgcttttaaacgc 921
||| |||||||||| || ||||| || |||| |||||||||| |||||||||||| |||
Sbjct: 1883 agcaatgggattgattgatgtttcattattagtgaatctttcatttttgcttttaatcgc 1824
Query: 922 tg 923
||
Sbjct: 1823 tg 1822
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6608
Number of Sequences: 1807
Number of extensions: 6608
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)