BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZF07RM1.SCF screened BAC_end
(944 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1095 692 0.0
3x_Contig106 476 e-134
>3x_Contig1095
Length = 5701
Score = 692 bits (349), Expect = 0.0
Identities = 443/461 (96%), Gaps = 10/461 (2%)
Strand = Plus / Minus
Query: 413 tattcaaaaattcaatcgaaggtctttttggtaccttggaaggaagcagtttgtctggta 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5328 tattcaaaaattcaatcgaaggtctttttggtaccttggaaggaagcagtttgtctggta 5269
Query: 473 gctcctagaggagaagcgttagaaccggaactgaattctctacctcctctgttaccaccg 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5268 gctcctagaggagaagcgttagaaccggaactgaattctctacctcctctgttaccaccg 5209
Query: 533 aagccacctctaccgcctctgctgccgcctctaccgcctcttccacctctgtcagaacca 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5208 aagccacctctaccgcctctgctgccgcctctaccgcctcttccacctctgtcagaacca 5149
Query: 593 cctctgttaaaaccaccacgttggttgttgccgaagttttgctttggaatggagtagtct 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5148 cctctgttaaaaccaccacgttggttgttgccgaagttttgctttggaatggagtagtct 5089
Query: 653 aatctgactggtctggtatt-atgtattcaccttgtagaccttcaaagggcttagtggca 711
||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||
Sbjct: 5088 aatctgactggtctgttattaatgtattcaccttgtagaccttcaaaggctttagtggca 5029
Query: 712 tcttcaatactaccgtattgaacgtaaccgaaaaccctttggttgttcaggttcctgggt 771
|||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||
Sbjct: 5028 tcttcaatactaccgtattgaacgtaaccg-aaaccctttggttgttca-gtttctgggt 4971
Query: 772 gagtttgggatacgaacaggaaacaatttcaccattttttaccaaaagatcttgtacaag 831
||| |||||||||||||| ||||||||||||||| | |||||| |||||||| |||||||
Sbjct: 4970 gag-ttgggatacgaaca-gaaacaatttcacca-tatttacc-aaagatctcgtacaag 4915
Query: 832 nttgtcttttgtcagcttcgaaaggacatattacccaagaa 872
||||| | |||||||||||||| |||| ||||||||||||
Sbjct: 4914 -ttgtc-tctgtcagcttcgaaa-gacaaattacccaagaa 4877
>3x_Contig106
Length = 1047
Score = 476 bits (240), Expect = e-134
Identities = 247/248 (99%), Gaps = 1/248 (0%)
Strand = Plus / Plus
Query: 48 aattttacaaaatgcacagattcgagactcttttcc-tagaccttcttcgcagacttcta 106
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 800 aattttacaaaatgcacagattcgagactcttttccatagaccttcttcgcagacttcta 859
Query: 107 gttcaaaaaatattaaaagctactatacacacatatacaaatgatttaaagaaaataaaa 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 gttcaaaaaatattaaaagctactatacacacatatacaaatgatttaaagaaaataaaa 919
Query: 167 taagaaaatagaagatgaatgcgattcagtgaagtttacaatgaatcagttgttgatcta 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 920 taagaaaatagaagatgaatgcgattcagtgaagtttacaatgaatcagttgttgatcta 979
Query: 227 tagatacaaataagatgacgaatggttattcttgtgatttaatttttttttatttttatt 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 980 tagatacaaataagatgacgaatggttattcttgtgatttaatttttttttatttttatt 1039
Query: 287 ttttgaca 294
||||||||
Sbjct: 1040 ttttgaca 1047
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9486
Number of Sequences: 1807
Number of extensions: 9486
Number of successful extensions: 252
Number of sequences better than 1.0e-20: 2
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)