BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZF08FM1.SCF screened BAC_end
(891 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1720 1273 0.0
>3x_Contig1720
Length = 19870
Score = 1273 bits (642), Expect = 0.0
Identities = 726/750 (96%), Gaps = 3/750 (0%)
Strand = Plus / Minus
Query: 87 cccttttttatgtaaattgtgaatcatttgtgacaaatcgcatatactgtgtctagagaa 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14462 cccttttttatgtaaattgtgaatcatttgtgacaaatcgcatatactgtgtctagagaa 14403
Query: 147 atttaaatttaataataaatacacctcacatcacgctcgcacaaagtttgcgggcctctt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14402 atttaaatttaataataaatacacctcacatcacgctcgcacaaagtttgcgggcctctt 14343
Query: 207 atgcaacccagtgctggtacctgcatcccgtcctatagcttcctttgtgcagtttggcca 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14342 atgcaacccagtgctggtacctgcatcccgtcctatagcttcctttgtgcagtttggcca 14283
Query: 267 tagacacagtcagggtagctgactggcagttcattactatacctaattgggaaataaata 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14282 tagacacagtcagggtagctgactggcagttcattactatacctaattgggaaataaata 14223
Query: 327 aacaaaaggcaactgttatgccttttctgttcaccccattgctgggttcgtaggagcttt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14222 aacaaaaggcaactgttatgccttttctgttcaccccattgctgggttcgtaggagcttt 14163
Query: 387 ttttttttagtgcacgattgtctctcgagaatgaaaaaaagtgcaatttaacgacaggta 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14162 ttttttttagtgcacgattgtctctcgagaatgaaaaaaagtgcaatttaacgacaggta 14103
Query: 447 ctttcgactggcttcttttgggaaaacctgatctagtaagagatgcaaatagtttatatt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14102 ctttcgactggcttcttttgggaaaacctgatctagtaagagatgcaaatagtttatatt 14043
Query: 507 tagtgttacagtgagtaatatctgcattgagcactgtgtgttagaaaaaacaatctaaag 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14042 tagtgttacagtgagtaatatctgcattgagcactgtgtgttagaaaaaacaatctaaag 13983
Query: 567 acactgcataccagcatctttccttctttcctttgttgtctcctcatctt-gaatcactt 625
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct: 13982 acactgcataccagcatctttcctcctttcctttgttgtctcctcatcttggaatcactt 13923
Query: 626 tcacaggctcattaacaacctcaccagacttaatttacaatcagtaattattgaactgaa 685
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13922 tcacaggctcatcaacaacctcaccagacttaatttacaatcagtaattattgaactgaa 13863
Query: 686 agtaatctgcttcttttatgagtatattatagagagaaccttggtcggttttgcaagcaa 745
||||||||||||||||||||||||||||||||||| |||| | ||| |||||||||||
Sbjct: 13862 ggtaatctgcttcttttatgagtatattatagagag-acctcgttcgtttttgcaagcag 13804
Query: 746 aaacttttttgcctcagccagggatc-atcattccaatgttgtaagttcctgatccaccc 804
||||| | | |||||||||||||||| ||||| | | |||||||||| | ||||||||||
Sbjct: 13803 aaactatctcgcctcagccagggatcaatcatccaagtgttgtaagtccgtgatccaccc 13744
Query: 805 ggggttaagaaaaactttctttcattttac 834
| | | ||||||| ||| || |||||||||
Sbjct: 13743 gtgttcaagaaaaccttcctctcattttac 13714
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,463
Number of Sequences: 1807
Number of extensions: 11463
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 891
length of database: 10,358,551
effective HSP length: 16
effective length of query: 875
effective length of database: 10,329,639
effective search space: 9038434125
effective search space used: 9038434125
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)