BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZF08RM1.SCF screened BAC_end
(893 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1766 1265 0.0
>3x_Contig1766
Length = 23951
Score = 1265 bits (638), Expect = 0.0
Identities = 704/721 (97%), Gaps = 4/721 (0%)
Strand = Plus / Plus
Query: 47 tatcactatctttgtcgttttttgcgtttcccttacgccaaatcatcatcttaaagagaa 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16494 tatcactatctttgtcgttttttgcgtttcccttacgccaaatcatcatcttaaagagaa 16553
Query: 107 accgttggtggctttgatatactacacatctttttactgatctgcagcatatatgagtga 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16554 accgttggtggctttgatatactacacatctttttactgatctgcagcatatatgagtga 16613
Query: 167 caatccgtttgagtcttatctcgcacgagaccagcaaccgccacagcccgctgtcgatgt 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16614 caatccgtttgagtcttatctcgcacgagaccagcaaccgccacagcccgctgtcgatgt 16673
Query: 227 gctttcgcagcctaatgcctcactagaatattgcacggtgtcagtggaagatacgatagc 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16674 gctttcgcagcctaatgcctcactagaatattgcacggtgtcagtggaagatacgatagc 16733
Query: 287 acaattaggaactgatttcgataatggtttatccaatccatcagaaattgcttataggaa 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16734 acaattaggaactgatttcgataatggtttatccaatccatcagaaattgcttataggaa 16793
Query: 347 atcaatttggggatcaaacgaagtcctacctgatgagaaagtatctctttggaaaaaatt 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16794 atcaatttggggatcaaacgaagtcctacctgatgagaaagtatctctttggaaaaaatt 16853
Query: 407 cttgtctacattcattgaagaccctttaattcttttgttgatcggatctgcagttatatc 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16854 cttgtctacattcattgaagaccctttaattcttttgttgatcggatctgcagttatatc 16913
Query: 467 tttcttaatgggaaacatcgatgattccatcagtattgctctggccatcatcattgttgt 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16914 tttcttaatgggaaacatcgatgattccatcagtattgctctggccatcatcattgttgt 16973
Query: 527 taccgtcgggtttgtacaagaatataagtcagagaagtcattagaagcatttaaacagtt 586
||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 16974 taccgtcgggtttgtacaagaatataagtcagagaagtcattagaagcattaaacaagtt 17033
Query: 587 agtcccagcggaatgtcatttgancagatcagggcagttatcccatgttcttgcgtcaaa 646
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 17034 agtcccagcggaatgtcatttgacaagatcagggcagttatcccatgttcttgcgtcaaa 17093
Query: 647 cttagttccaggtgatttggtcagatttaa-gtccgtgattgaaattctgctgattt-ag 704
|||||||||||||||||||||||||||||| ||| ||||| ||| | |||||||||| ||
Sbjct: 17094 cttagttccaggtgatttggtcagatttaaggtcggtgatagaattcctgctgatttaag 17153
Query: 705 aattgtag-atctatcgatttgggcgtagatgaaag-aatttggccggtgaaaatggacc 762
|||||||| ||||||||||||| ||||||||||||| |||||| | |||||||||| |||
Sbjct: 17154 aattgtagaatctatcgatttgtgcgtagatgaaagtaatttgacaggtgaaaatgaacc 17213
Query: 763 a 763
|
Sbjct: 17214 a 17214
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5970
Number of Sequences: 1807
Number of extensions: 5970
Number of successful extensions: 27
Number of sequences better than 1.0e-20: 1
length of query: 893
length of database: 10,358,551
effective HSP length: 16
effective length of query: 877
effective length of database: 10,329,639
effective search space: 9059093403
effective search space used: 9059093403
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)