BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZF09FM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1155 1277 0.0
>3x_Contig1155
Length = 6106
Score = 1277 bits (644), Expect = 0.0
Identities = 703/717 (98%), Gaps = 5/717 (0%)
Strand = Plus / Plus
Query: 87 ccaaaactaacttatgatgcaaaccgaattccttgccttggaaggtatgcaaacatttta 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 ccaaaactaacttatgatgcaaaccgaattccttgccttggaaggtatgcaaacatttta 808
Query: 147 ggaatttatcataattgacaaatccgacgacagcttcatagtttgtcgccttaaccatgt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 ggaatttatcataattgacaaatccgacgacagcttcatagtttgtcgccttaaccatgt 868
Query: 207 atttctcaattgagccgttggttttttcagcttcttgtgtctcttcaccattttcctgct 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 atttctcaattgagccgttggttttttcagcttcttgtgtctcttcaccattttcctgct 928
Query: 267 gctctattttctctgcctcctgcgtttcttgaacgtcctcaaccttttctgtatcccttt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 929 gctctattttctctgcctcctgcgtttcttgaacgtcctcaaccttttctgtatcccttt 988
Query: 327 cttttgtctctggtgtctttgattctccctttgtactctgctcagaaagctcaagtttaa 386
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 989 cttttgtctctggtgtctttgattctccctttgtactctgctcagaaagctcaggtttaa 1048
Query: 387 cctcttcttttccatcttctttcgtctcttgtgaaaggcccacacttaaaggagctgagt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1049 cctcttcttttccatcttctttcgtctcttgtgaaaggcccacacttaaaggagctgagt 1108
Query: 447 tttcatcgtcatctttactgggaatttctttaattggttccttggtatcgtctcttgtcg 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1109 tttcatcgtcatctttactgggaatttctttaattggttccttggtatcgtctcttgtcg 1168
Query: 507 tttccgtgactccttta-ttttgtccgaaccttctgactttttcgatatagagtctgttt 565
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1169 tttccgtgactcctttagttttgtccgaaccttctgactttttcgatatagtgtctgttt 1228
Query: 566 taatctctgaaggcgcttgcgaaacgataacttnctcgttctcgccctgaacaagttgaa 625
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1229 taatctctgaaggcgcttgcgaaacgataacttcctcgttctcgccctgaacaagttgaa 1288
Query: 626 tttcgacatctaactctgctgactcgtagaccccaacgtaaaattcgaaagatgacgtat 685
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1289 tttcgacatctaactctcctgactcgtagaccccaacgtaaaattcgaaagatgacgtat 1348
Query: 686 tctcgaat-attcaaggcanttnga-ttaatgaaatcttttaacattgtccattttagct 743
|||||||| ||||| |||| || || |||||||| |||||||||||||||||||||||||
Sbjct: 1349 tctcgaataattcagggcaatttgatttaatgaagtcttttaacattgtccattttagct 1408
Query: 744 tcccatacgtttctggttcccttgtttttac-atgaggctcggtac-ctactggcac 798
|||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||
Sbjct: 1409 tcccatacgtttctggttccgttgtttttacaatgaggctcggtacactactggcac 1465
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6262
Number of Sequences: 1807
Number of extensions: 6262
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)