BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC33ZF09RM1.SCF screened BAC_end
         (958 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig440                                                         1388   0.0  

>3x_Contig440 
          Length = 1389

 Score = 1388 bits (700), Expect = 0.0
 Identities = 759/774 (98%), Gaps = 5/774 (0%)
 Strand = Plus / Minus

                                                                       
Query: 48  tggataacattctgtggagtc-catcgacgtcaagatcgaaaggatcaaaaagaatagta 106
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 787 tggataacattctgtggagtcacatcgacgtcaagatcgaaaggatcaaaaagaatagta 728

                                                                       
Query: 107 ttatcaacggaatatacaagtaaaccttctgttgaaccggcggcaaatgcattagcagta 166
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 ttatcaacggaatatacaagtaaaccttctgttgaaccggcggcaaatgcattagcagta 668

                                                                       
Query: 167 ggagagaatcttatagacgtcactctgatcgccggtctgactcttcttgtcgataagtca 226
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 ggagagaatcttatagacgtcactctgatcgccggtctgactcttcttgtcgataagtca 608

                                                                       
Query: 227 cctcctctattcgaaccaggaaggctgttatctacgcgatcttccaagtctgaattttct 286
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 cctcctctattcgaaccaggaaggctgttatctacgcgatcttccaagtctgaattttct 548

                                                                       
Query: 287 gcatcttgatcaatgagatccaaagatcctgcttctgtcattctacttgagtttaaaaac 346
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 gcatcttgatcaatgagatccaaagatcctgcttctgtcattctacttgagtttaaaaac 488

                                                                       
Query: 347 tccatggtgccgtttaacatcatgtttttggatacggtaaatcttcttagcagtacttcg 406
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 tccatggtgccgtttaacatcatgtttttggatacggtaaatcttcttagcagtacttcg 428

                                                                       
Query: 407 tttggaatgtcataaagacatatggaattattgttaccggctgcaaccaaagagagacca 466
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 tttggaatgtcataaagacatatggaattattgttaccggctgcaaccaaagagagacca 368

                                                                       
Query: 467 tcgaaactgtaatgaatggtggtaaaatatttagatcttgctgaactttctgatgtgaac 526
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tcgaaactgtaatgaatggtggtaaaatatttagatcttgctgaactttctgatgtgaac 308

                                                                       
Query: 527 cgatcttccaaatgtctacccgagattatatcccttttgccgtcaatatttcccacctgt 586
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 cgatcttccaaatgtctacccgagattatatcccttttgccgtcaatatttcccacctgt 248

                                                                       
Query: 587 ttgccctcagcaacatcaaagaaatatatttgccccgctagagtacttgcagctatttgt 646
           |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 247 ttgccctcagcaacatcaaagaataatatttgccccgctagagtacttgcagctatttgt 188

                                                                       
Query: 647 tgaccattccgggtttcatag-aatagattanacatcagaatatacttcaaaaggctcta 705
           |||||||  | |||||||||| ||||||| | ||||||||| ||||||||||||||||||
Sbjct: 187 tgaccat--ccggtttcatagaaatagataaaacatcagaaaatacttcaaaaggctcta 130

                                                                       
Query: 706 cctgttgacttctaccgaagagagaccacactcttattggtttattccatgaagcggatg 765
           |||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||
Sbjct: 129 cctgttgacttctaccgaagagagaccacactctaattgttttatcccatgaagcggatg 70

                                                                 
Query: 766 ccaaaactccattctcattactgaaagataaaccaggagataagaccttcatgg 819
           |||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 69  ccaaaactccattctcattactgaaagataaa-caggagataggaccttcatgg 17


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6001
Number of Sequences: 1807
Number of extensions: 6001
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 958
length of database: 10,358,551
effective HSP length: 16
effective length of query: 942
effective length of database: 10,329,639
effective search space: 9730519938
effective search space used: 9730519938
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)