BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZF11RM1.SCF screened BAC_end
(904 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig370 513 e-145
3x_Contig290 337 2e-92
>3x_Contig370
Length = 983
Score = 513 bits (259), Expect = e-145
Identities = 266/267 (99%), Gaps = 1/267 (0%)
Strand = Plus / Minus
Query: 47 aaattgaaatat-attgttttgagaggcgaaacgtaattaccgattgatcgttaatagga 105
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 aaattgaaatattattgttttgagaggcgaaacgtaattaccgattgatcgttaatagga 208
Query: 106 agattggaagagagaagagaaaagagagtaccagtcggcttaatcatcttctgtcagagt 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 agattggaagagagaagagaaaagagagtaccagtcggcttaatcatcttctgtcagagt 148
Query: 166 ggggtttgtttcggattattgggtaagtccttaactctttgtatttggggtgtgttttct 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 ggggtttgtttcggattattgggtaagtccttaactctttgtatttggggtgtgttttct 88
Query: 226 tctttgtttgaccagtaatacacatttcttttcaggttgcgagcaacacaacaaagagtg 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87 tctttgtttgaccagtaatacacatttcttttcaggttgcgagcaacacaacaaagagtg 28
Query: 286 ttattctgtactttaataataagcacg 312
|||||||||||||||||||||||||||
Sbjct: 27 ttattctgtactttaataataagcacg 1
>3x_Contig290
Length = 1717
Score = 337 bits (170), Expect = 2e-92
Identities = 277/304 (91%), Gaps = 7/304 (2%)
Strand = Plus / Minus
Query: 556 tatcttggaagacagtaccttgattttggatcaattagcacagcataccacttgaacgga 615
||||||| |||||||||| ||||||| ||| ||||||||||||||||||||| ||||||
Sbjct: 1710 tatcttgnaagacagtac-ttgattt-ggaacaattagcacagcataccactgaaacgga 1653
Query: 616 catcatttccagaaagtatgaaatttcatttggtaagatttatttg-ccaaaccatccat 674
|| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1652 caacatgtccagaaagtatgaaatttcatttggtaagatttatttggccaaaccatccat 1593
Query: 675 gactgagtcagattgtgtttctcatgcgatgtattccgcag-aagcccgtctcagaaact 733
||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 1592 gactgagtcagatggtgtttctcatgcgatgtat-ccgcaggaagcccgtctcagaaact 1534
Query: 734 tgacttacgcatcagttttatttgtggaaattcanaaaagaacttatcaggcttttgata 793
||||||||||||||| |||||||||||||||||| || ||||||||||||||| ||||||
Sbjct: 1533 tgacttacgcatcaggtttatttgtggaaattcagaagagaacttatcaggctattgata 1474
Query: 794 ttccaaggtcgggatttgaaattccaaatttttccttgaggaaagggaagaaattgagga 853
|||| |||||| |||||||||| | ||| || || ||||||||| ||||| | ||||||
Sbjct: 1473 ttcc-aggtcgtgatttgaaatacgaaa-ttatcactgaggaaagtgaagagaatgagga 1416
Query: 854 aaat 857
||||
Sbjct: 1415 aaat 1412
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8038
Number of Sequences: 1807
Number of extensions: 8038
Number of successful extensions: 69
Number of sequences better than 1.0e-20: 2
length of query: 904
length of database: 10,358,551
effective HSP length: 16
effective length of query: 888
effective length of database: 10,329,639
effective search space: 9172719432
effective search space used: 9172719432
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)