BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZF12FM1.SCF screened BAC_end
(982 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1801 1051 0.0
>3x_Contig1801
Length = 57606
Score = 1051 bits (530), Expect = 0.0
Identities = 628/654 (96%), Gaps = 5/654 (0%)
Strand = Plus / Plus
Query: 87 gtttgaaagttgtactttcagtggtacccatttgattcttgggtcctggtatactccctc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34536 gtttgaaagttgtactttcagtggtacccatttgattcttgggtcctggtatactccctc 34595
Query: 147 ccaactaccgattagaaccgctatcttcacatccagcgggcttttgggtgctatgacaag 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34596 ccaactaccgattagaaccgctatcttcacatccagcgggcttttgggtgctatgacaag 34655
Query: 207 tgggttcttata-gtcgttatccatgattcattaaatggtaaagcaggattgcccgggtg 265
|||||||||| | || | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34656 tgggttcttacaagttgctatccatgattcattaaatggtaaagcaggattgcccgggtg 34715
Query: 266 gaaatggttgtttatcattgatgggttgattacaattcctatcgcgttgtatggactttt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34716 gaaatggttgtttatcattgatgggttgattacaattcctatcgcgttgtatggactttt 34775
Query: 326 cttctttccagaaccagatgctgatgcaagagagtcaaatcacaagaattcgtggatctt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34776 cttctttccagaaccagatgctgatgcaagagagtcaaatcacaagaattcgtggatctt 34835
Query: 386 tacggggaaacataaacaacaaatagacacattggattggtccatcttcaaaaggtgtgg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34836 tacggggaaacataaacaacaaatagacacattggattggtccatcttcaaaaggtgtgg 34895
Query: 446 ttccaggtggcactggtggttattctcttttgtgtgggtgcttggaggtgagaaacattc 505
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 34896 ttccaggtggcactggtggttattctcttttgtgtgggtgcttggaggtgagaacatttc 34955
Query: 506 atttgcatcgaactcaactttcaacatctggcttgataaccaaagttattcactagctga 565
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 34956 atttgcatcgaactcaactttcaacatctggcttgataaccaaggttattcactagctga 35015
Query: 566 caagatcaagtttccctgtcggaatatatgcagttgggatcgtttcttcagtggcatcat 625
||||| | || |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 35016 caagaac-aggttccctgtcggaatatatgcagttgggatcgtttctacagtggcatcat 35074
Query: 626 cattatatggccataaatactttcatttcgcc-agcatttgccaccttgcccttttcatt 684
||||||||| ||||||||||| |||||||||| |||| ||| ||| |||||||||||||
Sbjct: 35075 cattatatgtccataaatactctcatttcgccaagca-ttggcacgttgcccttttcatc 35133
Query: 685 aatattatccatgtccattggttctctattgatcttgaccaccccatttaaccc 738
| || ||||||||| ||||| |||||||||||||||||| | |||||| |||||
Sbjct: 35134 agta-tatccatgttcattgtttctctattgatcttgacgaacccattaaaccc 35186
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,959
Number of Sequences: 1807
Number of extensions: 12959
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 982
length of database: 10,358,551
effective HSP length: 16
effective length of query: 966
effective length of database: 10,329,639
effective search space: 9978431274
effective search space used: 9978431274
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)