BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZF12RM1.SCF screened BAC_end
(957 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig419 379 e-105
>3x_Contig419
Length = 1943
Score = 379 bits (191), Expect = e-105
Identities = 367/415 (88%), Gaps = 9/415 (2%)
Strand = Plus / Minus
Query: 477 tatggtatctgcatgttatctgtt-cttcgtaatctaaggaatgaatcagtagacaggca 535
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1943 tatggtatctgcatgt-atctgtttcttcgtaatctaaggaatgaatcagtagacaggca 1885
Query: 536 cagattacggctgcaaataacctaatgatcg-ccacaattattgaaatgaaattaaacct 594
|||| ||||||| | ||||||| || || ||||||||||||||||||||||||||||
Sbjct: 1884 caganacgggctgcanaaaacctaaggaacggccacaattattgaaatgaaattaaacct 1825
Query: 595 tagatgtctatcggctaaa-tgagtgacataaatgcctt-gatttaagtttaaagctaag 652
||||||||||||||||||| |||||||||||| |||||| ||||||||||||| |||| |
Sbjct: 1824 tagatgtctatcggctaaaatgagtgacataa-tgcctttgatttaagtttaaggctagg 1766
Query: 653 ttcagtgttcatggtggntcagtccactggatgatggttcagtttcagctcactggaatg 712
||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||
Sbjct: 1765 ttcagtgttcatggtggtccagtccactggatgaagggtcagtttcagctcactggaatg 1706
Query: 713 accgttttgc-acacaatatggcgtagaataatttcgttcactccagatttgataggagt 771
|||||||||| |||||||||| ||||||||| || ||||||||||| ||||||||
Sbjct: 1705 accgttttgcaacacaatatgccgtagaatagttcgtttcactccagagttgatagggag 1646
Query: 772 atcgatttctgggcggncttgacttttgcattgaatagttgttaccggaaaggggctgat 831
| ||| |||||||||| ||||||||||||||||| ||||||||| | || || | |||||
Sbjct: 1645 aacgaattctgggcggtcttgacttttgcattgattagttgttaactgatagtgtctgat 1586
Query: 832 ctttaaatcaaatactttttggaaatc-ttttggaacccccttttttggaatctt 885
||||| |||| |||| | || || ||| ||||||| |||||||| ||||||||||
Sbjct: 1585 ctttagatcagatacatatt-gagatctttttggagccccctttattggaatctt 1532
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7615
Number of Sequences: 1807
Number of extensions: 7615
Number of successful extensions: 72
Number of sequences better than 1.0e-20: 1
length of query: 957
length of database: 10,358,551
effective HSP length: 16
effective length of query: 941
effective length of database: 10,329,639
effective search space: 9720190299
effective search space used: 9720190299
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)