BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZG01RM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig551 1505 0.0
>3x_Contig551
Length = 2723
Score = 1505 bits (759), Expect = 0.0
Identities = 855/883 (96%), Gaps = 4/883 (0%)
Strand = Plus / Minus
Query: 49 taagatcgatccaagatccgaacaagccaagatcggtcttgctcaactaaaattgcaaca 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2431 taagatcgatccaagatccgaacaagccaagatcggtcttgctcaactaaaattgcaaca 2372
Query: 109 agaagaaattgatgatgccattcaattgttcgaagatgctgccgatctctcaagatcttt 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2371 agaagaaattgatgatgccattcaattgttcgaagatgctgccgatctctcaagatcttt 2312
Query: 169 cgatgaaaaactacaagctactactttcgctgaggctaccaaggtccagaaaaagatcag 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2311 cgatgaaaaactacaagctactactttcgctgaggctaccaaggtccagaaaaagatcag 2252
Query: 229 agctgatccattcattaagggtaagatcgacgaagctattgcagcctaccgtgctcaagg 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2251 agctgatccattcattaagggtaagatcgacgaagctattgcagcctaccgtgctcaagg 2192
Query: 289 tctcgcgtaaattagcatgatattcacgaatgaatttaattcatttcaatatgagtaaag 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2191 tctcgcgtaaattagcatgatattcacgaatgaatttaattcatttcaatatgagtaaag 2132
Query: 349 ctacaatagctcattgtttttgtctcaccttaatgaccataatggcaacataccatgcaa 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2131 ctacaatagctcattgtttttgtctcaccttaatgaccataatggcaacataccatgcaa 2072
Query: 409 catctaaacgaatgaattaccaagaaagttatgattttacaaacaaaaagttgtagcatt 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2071 catctaaacgaatgaattaccaagaaagttatgattttacaaacaaaaagttgtagcatt 2012
Query: 469 tcacccaagttatttatgactcgtaagcagcgtgaactgtgttaat-cgtaaacgacaag 527
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 2011 tcacccaagttatttatgactcgtaagcagcgtgaactgtgttaatgcgtaaacgacaag 1952
Query: 528 atctcaacattacaacgtgaagaataagaaatagttatcaattcttcacaaaaacaagac 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1951 atctcaacattacaacgtgaagaataagaaatagttatcaattcttcacaaaaacaagac 1892
Query: 588 aaatagatacacagaagatcaagaatacgagaacaacgcttttcaataacagctcattgc 647
||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1891 aaaaagaaacacagaagaacaagaatacgagaacaacgcttttcaataacagctcattgc 1832
Query: 648 anaatatgtgctcctaaatacccctggttcanaaacatcatcttctaccattttgctaga 707
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1831 aaaatatgtgctcctaaatacccctggttcaaaaacatcatcttctaccattttgctaga 1772
Query: 708 aacaaatacgtctttctgtatatacatgtatctnccccatctcacaatttaatcaaaatg 767
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||
Sbjct: 1771 aacaaatacgtctttctgtatatacatgtatctcccccatctcacaagttaatcaaattg 1712
Query: 768 ttattttaaacacttcgatagtatatca-ctacatacgttnc-acataaaagacattttt 825
| |||||||||||||||||||||||| | |||||||||| | ||||||| |||||||||
Sbjct: 1711 taattttaaacacttcgatagtatattatttacatacgtttcaacataaatgacattttt 1652
Query: 826 tggttttctctgaaagaagtgtatgttataaaagtttcttgggagaattatggccaggta 885
| |||||||||||||||||||||||| |||||||||||||| | |||||||| |||||
Sbjct: 1651 t-gttttctctgaaagaagtgtatgtaataaaagtttcttgtgtagattatggcaaggta 1593
Query: 886 ccgagtggaagtgaactacatttcaagaacttcattgttaacg 928
| ||||| |||||| ||||| |||||| |||||||||||||||
Sbjct: 1592 ctgagtgaaagtgagctacaattcaagtacttcattgttaacg 1550
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7727
Number of Sequences: 1807
Number of extensions: 7727
Number of successful extensions: 65
Number of sequences better than 1.0e-20: 1
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)