BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZG03FM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1243 1459 0.0
>3x_Contig1243
Length = 5571
Score = 1459 bits (736), Expect = 0.0
Identities = 800/818 (97%), Gaps = 3/818 (0%)
Strand = Plus / Minus
Query: 88 tggattacaaaaaaaataaaatacacagaatgcgaaagacaaacaaattaatttcaacag 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2130 tggattacaaaaaaaataaaatacacagaatgcgaaagacaaacaaattaatttcaacag 2071
Query: 148 agaaatcgaatctgctgaaggttggctgttaaagtaattttaaaactgggtaagtcatcg 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2070 agaaatcgaatctgctgaaggttggctgttaaagtaattttaaaactgggtaagtcatcg 2011
Query: 208 acgatataactgattggtcgttaagattttgcattactacctaatatcataacaaaggct 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2010 acgatataactgattggtcgttaagattttgcattactacctaatatcataacaaaggct 1951
Query: 268 gcaaatttgtcaaagatctacactgaaatcaggggaaacgaattaatcgttgtgtaaaat 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1950 gcaaatttgtcaaagatctacactgaaatcaggggaaacgaattaatcgttgtgtaaaat 1891
Query: 328 aaggcacgtagtgtaacgatcaagacttaacaaaagtgtctaaaggtaacaattgtgata 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1890 aaggcacgtagtgtaacgatcaagacttaacaaaagtgtctaaaggtaacaattgtgata 1831
Query: 388 ctttgatacaaatttatcgatgtcaaatctgcctattataaatttcatcaatttcaacca 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1830 ctttgatacaaatttatcgatgtcaaatctgcctattataaatttcatcaatttcaacca 1771
Query: 448 gaatggttcgtgcatatcaatgggcacatcccatgggtttaaaatcttcaattgcgaacc 507
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1770 gaatggttcgtgcatatcaatgggcacatcccaggggtttaaaatcttcaattgcgaacc 1711
Query: 508 gtttggcaggttttatcaagacgaagaatggggatgcgggatagtagagatgttattttc 567
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1710 gtttggcaggttttatcaagacgaagaagggggatgcgggatagtagagatgttattttc 1651
Query: 568 cacttcgcttttagcagtggttggaatgggagacattccagcgatgtctccaagatgatt 627
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct: 1650 cacttcgcttttagcagtggttggaatgggagacaatccagcgatgtctccaagaagatt 1591
Query: 628 acgtatgttgaacacgaagcgtcattctgtgatatgtgatgtaacgtttccaacatctat 687
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct: 1590 acgtatgttgaacacgaagcgtcattctgtgatatgtgaggtaacgtttccaacaactat 1531
Query: 688 attgtcagtgataatgaacaaatctcgcctcgcagtgcttcttcnagagcanatctacat 747
||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 1530 attgtcagtgaaaatgaacaaatctcgcctcgcagtgcttcttcaggagcaaatctacat 1471
Query: 748 ctatgatatcagtaacatgagacttcttcacaccatcggaacatcaatgaatgctcaagg 807
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct: 1470 ctatgatatcagtaacatgagacttcttcacaccatcgaaacatcaatgaatgctcaggg 1411
Query: 808 aattatgtcgatgtcaccaaattccgagaat-attaccttgtgtatccatcttcaccaaa 866
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 1410 aattatgtcgatgtcaccaaattccgagaataattaccttgtgtatccatctccaccaaa 1351
Query: 867 a-tgattatttcagagatcaagga-catgcaacaacga 902
| |||||| |||||||||||| || |||||||||||||
Sbjct: 1350 agtgattaattcagagatcaaagaccatgcaacaacga 1313
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7342
Number of Sequences: 1807
Number of extensions: 7342
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)