BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZG04FM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig587 1441 0.0
>3x_Contig587
Length = 1528
Score = 1441 bits (727), Expect = 0.0
Identities = 824/845 (97%), Gaps = 10/845 (1%)
Strand = Plus / Minus
Query: 86 ctctagtcaatgttggtttgcctctgattagatccattaagatatccacagttctggtca 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1020 ctctagtcaatgttggtttgcctctgattagatccattaagatatccacagttctggtca 961
Query: 146 gagtctttagagttgtcaaacgagctgctgactgagatgtttcaacatagaaattaataa 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 960 gagtctttagagttgtcaaacgagctgctgactgagatgtttcaacatagaaattaataa 901
Query: 206 atgattccagtctcgtatataaaacggtcaaaaattggtttgcctgtgaacacaatacaa 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 900 atgattccagtctcgtatataaaacggtcaaaaattggtttgcctgtgaacacaatacaa 841
Query: 266 caggattattcgaacataatactgctacggcgtggcatcctttccaaatctggtatggtt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 caggattattcgaacataatactgctacggcgtggcatcctttccaaatctggtatggtt 781
Query: 326 cgctagatcttaaaagtttcaacagtttggcaacgaatacaccaatgtcagatttcaaca 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 cgctagatcttaaaagtttcaacagtttggcaacgaatacaccaatgtcagatttcaaca 721
Query: 386 aagattggttaacataggtgggagatctcaaagtttgcagaatagaacggaattgactac 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 aagattggttaacataggtgggagatctcaaagtttgcagaatagaacggaattgactac 661
Query: 446 cttctgattcttcaattagcttggctaacgaacttaatgggacggtaactgtagccatga 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 cttctgattcttcaattagcttggctaacgaacttaatgggacggtaactgtagccatga 601
Query: 506 tgtagatgaagttgagtattccaaatcacaatctgaatttggttacaaggtcttcaacaa 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 tgtagatgaagttgagtattccaaatcacaatctgaatttggttacaaggtcttcaacaa 541
Query: 566 tgtcaagagattattccaacttcttgaacaatggtagtaaatatagaagcctactttcac 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 tgtcaagagattattccaacttcttgaacaatggtagtaaatatagaagcctactttcac 481
Query: 626 ctattcgcactgataacaaccgataaatactttatgatcaattcaagattttatcactag 685
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 480 ctattcgcactgataacaaccgataaatac-ttatgatcaattcaagattttatcactag 422
Query: 686 ctctcaagccttctcttcacaatgcaatgcgatgagcttcannagttgattttttcattc 745
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 421 ctctcaagccttctcttcacaatgcaatgcgatgagcttca-aagttgattttttcattc 363
Query: 746 ttcaatcgatgggagaattcttttttacgtgggtagcgcatacacaatacatggtgatat 805
|||||||||| ||||| ||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 362 ttcaatcgattggagatttc-tttttacgtgggtagcgcatacacaatacat-gtgatat 305
Query: 806 ttgctttttgggtataccaattaaaattaagccgtatgtcaaggaattaggccctgttgg 865
||||||||| |||||| |||||||||| | |||||||||||| |||||||||| |||| |
Sbjct: 304 ttgcttttt-ggtatagcaattaaaataatgccgtatgtcaa-gaattaggccttgtt-g 248
Query: 866 gcgcaatcgttagcgcctgttgacttttaatcacaaggtgggggggtttcgagcccccca 925
||||||||| |||||| || ||||| ||||||||||||| ||||| |||||||||||||
Sbjct: 247 gcgcaatcggtagcgcgtg-tgactcttaatcacaaggttggggg--ttcgagcccccca 191
Query: 926 caggg 930
|||||
Sbjct: 190 caggg 186
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6638
Number of Sequences: 1807
Number of extensions: 6638
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)