BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZG04RM1.SCF screened BAC_end
(941 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1795 1243 0.0
>3x_Contig1795
Length = 38452
Score = 1243 bits (627), Expect = 0.0
Identities = 735/761 (96%), Gaps = 8/761 (1%)
Strand = Plus / Plus
Query: 48 tagaacccttcgatacaaacccatccgcgttgcagcagttactactgactatgagataca 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tagaacccttcgatacaaacccatccgcgttgcagcagttactactgactatgagataca 307
Query: 108 aattcgtgaccgaggagatagattcgtaccgcatcgtagacactacggcaaattccgtga 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 aattcgtgaccgaggagatagattcgtaccgcatcgtagacactacggcaaattccgtga 367
Query: 168 aagagatgctaatcaaaaggaaaatcgaatgcgtcagagaatacgtttacggaaccattt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aagagatgctaatcaaaaggaaaatcgaatgcgtcagagaatacgtttacggaaccattt 427
Query: 228 ctgttttcaactctctattcaaatcagaatcaaaattgatacacattgaactgttactcg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ctgttttcaactctctattcaaatcagaatcaaaattgatacacattgaactgttactcg 487
Query: 288 acgatactacatccaagactgcccatgacttcgaaacgtctcttgctctattgaaattta 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 acgatactacatccaagactgcccatgacttcgaaacgtctcttgctctattgaaattta 547
Query: 348 taaacgagtgtaccaatttcctcatatcacaactcgaaacccataaatcacaccttaccg 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 taaacgagtgtaccaatttcctcatatcacaactcgaaacccataaatcacaccttaccg 607
Query: 408 agtccgtctgtttacaactagtgtattgctctttcagactggcagacgcaaatcaaaact 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 agtccgtctgtttacaactagtgtattgctctttcagactggcagacgcaaatcaaaact 667
Query: 468 tccatcacttgttcatgaataaactattagaatcaaacctatttacaaaagatgctctca 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 tccatcacttgttcatgaataaactattagaatcaaacctatttacaaaagatgctctca 727
Query: 528 catcagncatcacanagagagtagaattggcaacgaggtattgagcagtgtggctactgt 587
|||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 catcagcaatcacaaagagagtagaattggcaacgaggtattgagcagtgtggctactgt 787
Query: 588 gtggatactgtgcttctaaac-tgactatcgcgtataatttaatgt-gaatagtggtcct 645
||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
Sbjct: 788 gtggatactgtgcttctaaacttgactatcgcgtataatttaatgtggaatagtggtctt 847
Query: 646 ggtaattatttag-aaagccccgcttgttaaaaat-acatcaaactttcttacgt-aatt 702
| | |||| ||| |||||| |||||||||||||| ||||||||||||| ||||| ||||
Sbjct: 848 gtaatttatatagaaaagcctcgcttgttaaaaatcacatcaaactttc-tacgtaaatt 906
Query: 703 aagggttgggttt-tatgccttttgcttccggaaaacttcaggaattttcattaaagttt 761
||||||||||||| ||||| ||||||| ||||||||||||| || |||||| ||||||||
Sbjct: 907 aagggttgggtttctatgcattttgctaccggaaaacttcatgatttttcaataaagttt 966
Query: 762 tgactcgccaccggaacggggaaaatttggaaaaaagaagg 802
|||||||| | |||||| ||||||| ||| |||||||||||
Sbjct: 967 tgactcgcaaacggaac-gggaaaaattgaaaaaaagaagg 1006
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5992
Number of Sequences: 1807
Number of extensions: 5992
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)