BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZG05RM1.SCF screened BAC_end
(912 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1243 1411 0.0
>3x_Contig1243
Length = 5571
Score = 1411 bits (712), Expect = 0.0
Identities = 754/763 (98%), Gaps = 4/763 (0%)
Strand = Plus / Plus
Query: 125 attgctagttccagttcaggtcccgcgtcctgcgtaacgaaatttggtctcgaggttttt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 attgctagttccagttcaggtcccgcgtcctgcgtaacgaaatttggtctcgaggttttt 64
Query: 185 ccggttgatcccctcccccgcttttttttttcacgaaacttctctcaattatcgtcgtca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 ccggttgatcccctcccccgcttttttttttcacgaaacttctctcaattatcgtcgtca 124
Query: 245 tagagaacgtggttttctctccagtaaaggaataaacggggaagctctaaacagagggta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 tagagaacgtggttttctctccagtaaaggaataaacggggaagctctaaacagagggta 184
Query: 305 cattcattcttgtctaacttaagatgcgcaggtctgttgatgggagttgggaatggtact 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 cattcattcttgtctaacttaagatgcgcaggtctgttgatgggagttgggaatggtact 244
Query: 365 cagtaagtagttttgcttagggtaggtacatactgtttataaaaaattttaggttgggtt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 cagtaagtagttttgcttagggtaggtacatactgtttataaaaaattttaggttgggtt 304
Query: 425 aagttcagtccgatagtaatgagtattgttccagtagaatacaatctcctcctctctcag 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 aagttcagtccgatagtaatgagtattgttccagtagaatacaatctcctcctctctcag 364
Query: 485 ggtccgaaatgtatttgtacataaaaccctcgcttgacacgaccctaatcggtaccattg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggtccgaaatgtatttgtacataaaaccctcgcttgacacgaccctaatcggtaccattg 424
Query: 545 tcaatgtatctgaattttggtagtcgccattgtttgatgcattnttctcgaat-aatcgg 603
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 425 tcaatgtatctgaattttggtagtcgccattgtttgatgcatttttctcgaataaatcgg 484
Query: 604 gatactctttgatgctcaactcaatcggatcatcgatggcagctatggcctttattggtt 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 gatactctttgatgctcaactcaatcggatcatcgatggcagctatggcctttattggtt 544
Query: 664 gattcgatgaagtggttatttttatggctggc-aagtgacgcgagggttcaagtattgag 722
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 545 gattcgatgaagtggttattttta-ggctggcaaagtgacgcgagggttcaagtattgag 603
Query: 723 gatacttttattgggaaatacgctcctaaagttctggcagctttacgagaaagtcgttgt 782
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 gatacttttattggaaaatacgctcctaaagttctggcagctttacgagaaagtcgttgt 663
Query: 783 gaagattttcttatcatgcgaccgacagtacttctctgggcgtcgactacgggttccttg 842
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 664 gaagattttcttatcatgcgaccgacagtacttctcttggcgtcgactacgggttccttg 723
Query: 843 ctactatggtttggagtttatacttgaagccttttcatcaatt 885
|||||||||||| ||||||||||||| ||||| ||||||||||
Sbjct: 724 ctactatggttt-gagtttatacttgtagcctcttcatcaatt 765
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6466
Number of Sequences: 1807
Number of extensions: 6466
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 912
length of database: 10,358,551
effective HSP length: 16
effective length of query: 896
effective length of database: 10,329,639
effective search space: 9255356544
effective search space used: 9255356544
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)