BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZG06FM1.SCF screened BAC_end
(927 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1776 1049 0.0
>3x_Contig1776
Length = 26138
Score = 1049 bits (529), Expect = 0.0
Identities = 718/767 (93%), Gaps = 11/767 (1%)
Strand = Plus / Plus
Query: 87 tttgatacattcttaaagggtaaggatatcaaggtgtcgcggattttactagaaactttg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3582 tttgatacattcttaaagggtaaggatatcaaggtgtcgcggattttactagaaactttg 3641
Query: 147 gcatctcgccgtattatgccatctctaccgtccatagaagaatacattgaactcgtcgga 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3642 gcatctcgccgtattatgccatctctaccgtccatagaagaatacattgaactcgtcgga 3701
Query: 207 caggctggtcaggaaacagatgcaggcattgttccacttgaaagaaaatcaaaactttat 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3702 caggctggtcaggaaacagatgcaggcattgttccacttgaaagaaaatcaaaactttat 3761
Query: 267 cttttgcacgtactttccccggtattcgcctctaatttaacatgcagaatgactgatctc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3762 cttttgcacgtactttccccggtattcgcctctaatttaacatgcagaatgactgatctc 3821
Query: 327 ctgttaccatactgtattcaccaatcagagatatttgctttgttggacttagccctcaaa 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3822 ctgttaccatactgtattcaccaatcagagatatttgctttgttggacttagccctcaaa 3881
Query: 387 tcaaaatactctaaagacattgcaaaatcttgtgtcaacaacttcgtgcttagaatcgca 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3882 tcaaaatactctaaagacattgcaaaatcttgtgtcaacaacttcgtgcttagaatcgca 3941
Query: 447 cagttgaaggactctcaagtggacaatagtcttaacatttcttcattatattatagaant 506
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 3942 cagttgaaggactctcaagtggacaatagtcttaacatttcttcattatattatagaatt 4001
Query: 507 aaggcatatcatantggaactgtaccgaatgcaaatcttcttgcttttatcatagcatta 566
|||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4002 aaggcatacaataatggaactgtaccgaatgcaaatcttcttgcttttatcatagcatta 4061
Query: 567 ctcactaactctaacttta-agcagtacagaccattat-aacgaac-acctgtcaaagag 623
||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||
Sbjct: 4062 ctcactaactctaactttagagcagtacagaccattatcaacgaacaacctgtcaaagag 4121
Query: 624 atcacc-aagttatcgaag-tgtc-aaaatcaaaccacc-ttaatgatcattttgaatta 679
|||||| |||||||||||| |||| |||||||||||||| ||| |||||| |||| |||
Sbjct: 4122 atcaccaaagttatcgaagttgtcaaaaatcaaaccacctttattgatcagtttggattt 4181
Query: 680 acggga-ttgattgaaagac-ctactgcacctttttgaccataaagcctagttttccacc 737
|| ||| ||||| || |||| ||||||||| |||| || ||| ||| |||||| | ||
Sbjct: 4182 actggagttgatagagagacgctactgcactttttgaacaatagagcatagtttccaaca 4241
Query: 738 ttcaaatggatagatggtcaaaacccctggttatagattact-aaaccatttaaacctta 796
|||||| ||||||| || |||| | | ||||||||||||| |||| ||||||||||||
Sbjct: 4242 ttcaaaatgatagattgttcaaacacat-gttatagattactaaaacaatttaaacctta 4300
Query: 797 ccccggaattacgggaaaaagggctaaattagggacttttttttttg 843
| || ||||||| | ||| || ||||| ||| ||| ||||||||||
Sbjct: 4301 ctcccgaattactgtaaatagtgctaatatagtgacatttttttttg 4347
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7126
Number of Sequences: 1807
Number of extensions: 7126
Number of successful extensions: 67
Number of sequences better than 1.0e-20: 1
length of query: 927
length of database: 10,358,551
effective HSP length: 16
effective length of query: 911
effective length of database: 10,329,639
effective search space: 9410301129
effective search space used: 9410301129
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)