BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZG06RM1.SCF screened BAC_end
(962 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1752 1061 0.0
>3x_Contig1752
Length = 22471
Score = 1061 bits (535), Expect = 0.0
Identities = 639/664 (96%), Gaps = 8/664 (1%)
Strand = Plus / Plus
Query: 52 gcttcatgaatctggcggtcccatatttcaaacatgcatttaagcccataattcttgttt 111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4764 gcttcatgaatctggcggtcccatatttcaaacatgcatttaagcccataattcttgttt 4823
Query: 112 ccatgaccacccttcaaattgttaattttccaaattatcgaacccgctgttatgtcgaac 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4824 ccatgaccacccttcaaattgttaattttccaaattatcgaacccgctgttatgtcgaac 4883
Query: 172 acaacatctcctatatcgcttttaaacaggggcggcttttcgaggtcaatattccacttt 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4884 acaacatctcctatatcgcttttaaacaggggcggcttttcgaggtcaatattccacttt 4943
Query: 232 cgaataactgactttatcggaattttaattaaaagctcctttgcactatcctgagctttg 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4944 cgaataactgactttatcggaattttaattaaaagctcctttgcactatcctgagctttg 5003
Query: 292 aaatgcgtagttatggcagctttcaacaatagcttatcctgggtttcttggttctttcta 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5004 aaatgcgtagttatggcagctttcaacaatagcttatcctgggtttcttggttctttcta 5063
Query: 352 ggtttttgggatagcccgaatgactgtagttntataactggttcatcaagtagcggtcta 411
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 5064 ggtttttgggatagcccgaatgactgtagttttataactggttcatcaagtagcggtcta 5123
Query: 412 ttcaatttataattacaaagctcaaattctccatccggtggaataaacttaataactgga 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5124 ttcaatttataattacaaagctcaaattctccatccggtggaataaacttaataactgga 5183
Query: 472 gattcttccttgattaaggtatgcangtctacgcattcatggcaattttaaacgtctcat 531
||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||
Sbjct: 5184 gattcttccttgattaaggtatgcaggtctacgcattcatgg-aattttaaacgtttcat 5242
Query: 532 gaagaggacatgcttctgcatcaactnattcaatcctatactcatttga-gcataccaga 590
|||| | |||| |||||||||||||| ||||||||||||||||| |||| ||||||||||
Sbjct: 5243 gaagtgtacattcttctgcatcaacttattcaatcctatactcaattgaggcataccaga 5302
Query: 591 caaat-acttcggcataatattggttccgttgattacattatttctggacacaccctttc 649
||||| ||| ||||||| |||| |||||||||||||||||||||||| |||| |||| |
Sbjct: 5303 caaataactccggcatattatt-gttccgttgattacattatttctgaccaca-ccttcc 5360
Query: 650 tcgaaatccattaagaatttttaatttcccaattacatc-agaaagaaattcgttcttac 708
||||||||||| | ||| || ||||||| |||||||||| |||||| |||||||||||||
Sbjct: 5361 tcgaaatccataatgaa-ttctaatttctcaattacatcaagaaag-aattcgttcttac 5418
Query: 709 cgta 712
||||
Sbjct: 5419 cgta 5422
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6169
Number of Sequences: 1807
Number of extensions: 6169
Number of successful extensions: 26
Number of sequences better than 1.0e-20: 1
length of query: 962
length of database: 10,358,551
effective HSP length: 16
effective length of query: 946
effective length of database: 10,329,639
effective search space: 9771838494
effective search space used: 9771838494
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)