BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZG07FM1.SCF screened BAC_end
(947 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig717 1289 0.0
>3x_Contig717
Length = 3533
Score = 1289 bits (650), Expect = 0.0
Identities = 748/770 (97%), Gaps = 9/770 (1%)
Strand = Plus / Minus
Query: 87 caagcctcttcttgcagacaaagactgtttagccttttgtagatgtggctgaccttgtga 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1665 caagcctcttcttgcagacaaagactgtttagccttttgtagatgtggctgaccttgtga 1606
Query: 147 aagccttggttgatttggcattacaacgcccccagcagcagcaggcggtctgaaagtacc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1605 aagccttggttgatttggcattacaacgcccccagcagcagcaggcggtctgaaagtacc 1546
Query: 207 tgctgctgcctgagaacctcccacgccaccaattggacttggcgcaccagcattgccgct 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1545 tgctgctgcctgagaacctcccacgccaccaattggacttggcgcaccagcattgccgct 1486
Query: 267 gccagtacaactgggaacaccttgcggacgttttggagcctttctaatcggattgagttc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1485 gccagtacaactgggaacaccttgcggacgttttggagcctttctaatcggattgagttc 1426
Query: 327 atgatcctgttgttgcttattactggcactaccagaagattccgaagcagatgacatacc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1425 atgatcctgttgttgcttattactggcactaccagaagattccgaagcagatgacatacc 1366
Query: 387 gtcagactgtatactcaaattcgccagagcctcttgtgtctgcttctcaaactgtccctt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1365 gtcagactgtatactcaaattcgccagagcctcttgtgtctgcttctcaaactgtccctt 1306
Query: 447 cttttcctctatatcgggaagttctgtcttatgagacagcagcaggcccccctgctgctg 506
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1305 cttttcctctatatcgggaagttctgtcttaggagacagcagcaggcccccctgctgctg 1246
Query: 507 ttgctgctgatcatgctggtcattttccgtaactgattgtgctaacaattccgtatgctg 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1245 ttgctgctgatcatgctggtcattttccgtaactgattgtgctaacaattccgtatgctg 1186
Query: 567 tagatgctgtagatgctggtcctgttgttttaggatcggttgtcgttgttgttgctgttg 626
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1185 tagatgctgtagatgctggtcctgttgttttaggaacggttgtcgttgttgttgctgttg 1126
Query: 627 tgttggctgtatttgtatattatgttgntgntgntgntggtgttctaattgctggctatt 686
|||| |||||||||||||||||||||| || || || || |||||||| |||||||||||
Sbjct: 1125 tgtttgctgtatttgtatattatgttgttgttgttgttgttgttctaagtgctggctatt 1066
Query: 687 ctcagcctctt-aaccattgtctttcgtggcagtaggcggcaacggtttattcacaatct 745
||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 1065 ctcagcctcttcaaccattgtcttcggtggcag-aggcggcaacggtttattcacaatct 1007
Query: 746 gctctatctg-accgaatttctgtgactggttagaatgattactacccggaccgtttcaa 804
|||||||||| |||||| ||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 1006 gctctatctgaaccgaa-ttctgtgactggttagaatgaatacta-ccggaccgtttcaa 949
Query: 805 ctgttctctgtttcttggaaaagctttcactttgggcatgcaaactggaa 854
||| |||||| ||||||| |||||||||||| | ||||||||||||||||
Sbjct: 948 ctg-tctctg-ttcttgg-aaagctttcactct-ggcatgcaaactggaa 903
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6301
Number of Sequences: 1807
Number of extensions: 6301
Number of successful extensions: 137
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)