BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZG07RM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1015 1463 0.0
3x_Contig1806 817 0.0
3x_Contig1745 396 e-110
>3x_Contig1015
Length = 4152
Score = 1463 bits (738), Expect = 0.0
Identities = 832/851 (97%), Gaps = 10/851 (1%)
Strand = Plus / Minus
Query: 43 gcttgaaccagagcattagtctttttgtaaccatgggaactcgacaggagtaccagactg 102
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 4046 gcttgaaccagagcattag-ctttttgtaaccatgggaactcgacaggagtaccagactg 3988
Query: 103 gttgacaattacagtgttagggttagcctccaatacagcacgaactagatcgtttgttct 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3987 gttgacaattacagtgttagggttagcctccaatacagcacgaactagatcgtttgttct 3928
Query: 163 tgctggcaacgtcatatcttccctatcatggccctcagattcccattcagcattcatacc 222
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 3927 tgctggcaacgtcatatcttccctatcatggccctcagattcccattcagcattcaaacc 3868
Query: 223 gatgcataaaatggctttatcatgagcggctgcaagctttgctgctttcttgatttcctc 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3867 gatgcataaaatggctttatcatgagcggctgcaagctttgctgctttcttgatttcctc 3808
Query: 283 atctgcatcaatagctttggtgacaccaacctgaagagcaccagatccgaattcactcac 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3807 atctgcatcaatagctttggtgacaccaacctgaagagcaccagatccgaattcactcac 3748
Query: 343 caactcgcttgttggaccagaaccatattcgattctgactttatacgctttacccttttg 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3747 caactcgcttgttggaccagaaccatattcgattctgactttatacgctttacccttttg 3688
Query: 403 taaagtaacagtcttggtcttttcaatggtaccggcaccgaaacagaaatcaccactgac 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3687 taaagtaacagtcttggtcttttcaatggtaccggcaccgaaacagaaatcaccactgac 3628
Query: 463 ttggcccttcctctgatcaatcaataattcgtcgtctaagtacaaaacaccggtaccgaa 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3627 ttggcccttcctctgatcaatcaataattcgtcgtctaagtacaaaacaccggtaccgaa 3568
Query: 523 aacctgcaaaccaaatatgtagtcggcatcttcttcaggagtgaagtaaccttctaatgt 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3567 aacctgcaaaccaaatatgtagtcggcatcttcttcaggagtgaagtaaccttctaatgt 3508
Query: 583 gatgtaaaatattgggttagtggtgtcaattttntcatgcttgaaatcgaaaagcaagtt 642
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 3507 gatgtaaaatattgggttagtggtgtcaattttttcatgcttgaaatcgaaaagcaagtt 3448
Query: 643 gatagagtgtttaaagggtagc-acatggaatggagattcatcctttgctctcttttcaa 701
|| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 3447 gaaagagtgtttaaa-ggtagcaacatggaatggagattcatcctttgctctcttttcaa 3389
Query: 702 cgggctcactgtagaaggaaccggtagcacctgcattgtctccctctgctgggttttga- 760
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 3388 cgggctcactgtagaaggaaccggtagcacctgcattgtctccctctgct-ggttttgag 3330
Query: 761 ggatcgactaccagttgctcaattaaa-tanataaagtc-tatgagactctgccccaatt 818
||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct: 3329 ggatcgactaccagttgctcaattaaattagataaagtcttatgagactctgccccaatt 3270
Query: 819 gttgtatggtacttctttgcccacttttcttaacatncccttggtaaggcggaatatact 878
| |||||||||||||||||||||| |||||||||| ||||| |||||||| |||| ||
Sbjct: 3269 g-tgtatggtacttctttgcccac-tttcttaacaatcccttcgtaaggcgaaata-aca 3213
Query: 879 tagtaagaatt 889
|||||||||||
Sbjct: 3212 tagtaagaatt 3202
>3x_Contig1806
Length = 53694
Score = 817 bits (412), Expect = 0.0
Identities = 697/786 (88%), Gaps = 5/786 (0%)
Strand = Plus / Minus
Query: 63 ctttttgtaaccatgggaactcgacaggagtaccagactggttgacaattacagtgttag 122
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52071 ctttttgtaatcatgggaactcgacaggagtaccagactggttgacaattacagtgttag 52012
Query: 123 ggttagcctccaatacagcacgaactagatcgtttgttcttgctggcaacgtcatatctt 182
| || |||||||| |||||||| || ||||||||||||||| ||||||| ||||||||||
Sbjct: 52011 gattggcctccaaaacagcacggacgagatcgtttgttcttcctggcaaagtcatatctt 51952
Query: 183 ccctatcatggccctcagattcccattcagcattcataccgatgcataaaatggctttat 242
|||||||||| || |||||||||||||| || |||| ||| || ||||||||||||||||
Sbjct: 51951 ccctatcatgaccttcagattcccattctgcgttcaaaccaatacataaaatggctttat 51892
Query: 243 catgagcggctgcaagctttgctgctttcttgatttcctcatctgcatcaatagctttgg 302
| ||| | || ||||| |||||||| ||||||||||||||||||||||||||||| || |
Sbjct: 51891 cgtgacccgcagcaagttttgctgccttcttgatttcctcatctgcatcaatagcctttg 51832
Query: 303 tgacaccaacctgaagagcaccagatccgaattcactcaccaactcgcttgttggaccag 362
||||||||||| |||||||||| |||||||||||| |||| | ||| ||||| ||||
Sbjct: 51831 caacaccaacctggagagcaccagctccgaattcacttaccagttggctagttgggccag 51772
Query: 363 aaccatattcgattctgactttatacgctttacccttttgtaaagtaacagtcttggtct 422
| ||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||
Sbjct: 51771 agccatattcgattctgactttatacgatttacccttttgtagagtaacagtcttagtct 51712
Query: 423 tttcaatggtaccggcaccgaaacagaaatcaccactgacttggcccttcctctgatcaa 482
||||| ||||||| |||||||||||||| |||||| | ||| || ||| |||||||||
Sbjct: 51711 tttcattggtaccagcaccgaaacagaatccaccacgggtttgacctttcttctgatcaa 51652
Query: 483 tcaataattcgtcgtctaagtacaaaacaccggtaccgaaaacctgcaaaccaaatatgt 542
|||||||||| || || |||||||| | ||| |||||| |||||||||||||||||||||
Sbjct: 51651 tcaataattcttcatccaagtacaatagaccagtaccgtaaacctgcaaaccaaatatgt 51592
Query: 543 agtcggcatcttcttcaggagtgaagtaaccttctaatgtgatgtaaaatattgggttag 602
||| |||||||| |||||||||||||||||||| | |||||||||||||| |||||||
Sbjct: 51591 agttagcatcttcctcaggagtgaagtaaccttcaagtgtgatgtaaaataatgggttat 51532
Query: 603 tggtgtcaattttntcatgcttgaaatcgaaaagcaagttgatagagtgtttaaagggta 662
| ||||||||||| ||||| |||||||||||||| ||||||| ||| || ||||| | |
Sbjct: 51531 tcgtgtcaattttatcatgtttgaaatcgaaaagtaagttgaaagaatgcttaaa-agca 51473
Query: 663 gc-acatggaatggagattcatcctttgctctcttttcaacgggctcactgtagaaggaa 721
|| ||||| |||||||||||||||||||||||||||||||| ||||||||||| ||| ||
Sbjct: 51472 gcaacatgaaatggagattcatcctttgctctcttttcaactggctcactgtaaaagaaa 51413
Query: 722 ccggtagcacctgcattgtctccctctgctgggttttgaggatcgactaccagttgctca 781
||||||||||||||||| ||||| |||||||| ||| |||||| |||||||||||||||
Sbjct: 51412 ccggtagcacctgcattatctccttctgctggttttgaaggatcaactaccagttgctca 51353
Query: 782 attaaa-tanataaagtc-tatgagactctgccccaattgttgtatggtacttctttgcc 839
|||||| || |||| ||| ||||||||||||||||||||| | ||||||||||| |||||
Sbjct: 51352 attaaattagataaggtcttatgagactctgccccaattg-tatatggtacttccttgcc 51294
Query: 840 cacttt 845
||||||
Sbjct: 51293 cacttt 51288
>3x_Contig1745
Length = 19830
Score = 396 bits (200), Expect = e-110
Identities = 425/500 (85%)
Strand = Plus / Plus
Query: 89 ggagtaccagactggttgacaattacagtgttagggttagcctccaatacagcacgaact 148
||||||||||||||||||| || ||||||||||| || ||||| || |||||||| ||
Sbjct: 62 ggagtaccagactggttgatgatgacagtgttaggattggcctctaagacagcacggacg 121
Query: 149 agatcgtttgttcttgctggcaacgtcatatcttccctatcatggccctcagattcccat 208
||||||||||||||| ||||||| ||||||||||||||||||| || ||||||||||||
Sbjct: 122 agatcgtttgttcttcctggcaagatcatatcttccctatcatgaccttcagattcccat 181
Query: 209 tcagcattcataccgatgcataaaatggctttatcatgagcggctgcaagctttgctgct 268
|| || |||| ||| || |||||||||||||| || ||| | || ||||| ||||||||
Sbjct: 182 tctgcgttcaaaccaatacataaaatggctttgtcgtgacccgcagcaagttttgctgcc 241
Query: 269 ttcttgatttcctcatctgcatcaatagctttggtgacaccaacctgaagagcaccagat 328
||| ||||||| ||||||||||||||||| |||| |||||||| |||| | | ||||||
Sbjct: 242 ttcctgatttcttcatctgcatcaatagccttggcaacaccaacttgaaaaccgccagat 301
Query: 329 ccgaattcactcaccaactcgcttgttggaccagaaccatattcgattctgactttatac 388
|| ||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||
Sbjct: 302 ccaaattcactcaccaactcacttgttggaccagaaccgtattcgattctaactttatac 361
Query: 389 gctttacccttttgtaaagtaacagtcttggtcttttcaatggtaccggcaccgaaacag 448
|||||||||||||| | | | |||||||||||||||||| |||||| |||||||| |||
Sbjct: 362 gctttacccttttgcagactgacagtcttggtcttttcatcggtaccagcaccgaagcag 421
Query: 449 aaatcaccactgacttggcccttcctctgatcaatcaataattcgtcgtctaagtacaaa 508
||| |||| |||| | ||| ||||||||| || |||||| || || ||||||||
Sbjct: 422 aaacttccacgagtttggtctttcttctgatcaaccactaattcatcatccaagtacaat 481
Query: 509 acaccggtaccgaaaacctgcaaaccaaatatgtagtcggcatcttcttcaggagtgaag 568
| ||||| ||| ||||||| ||||| |||| ||||| ||||||||||| |||||| |||
Sbjct: 482 atgccggtgccgtaaacctgtaaaccgaataggtagttggcatcttctttaggagtaaag 541
Query: 569 taaccttctaatgtgatgta 588
|||||||| | |||||||||
Sbjct: 542 taaccttccagtgtgatgta 561
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5427
Number of Sequences: 1807
Number of extensions: 5427
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 3
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)