BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC33ZG08FM1.SCF screened BAC_end (846 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig343 280 4e-75 >3x_Contig343 Length = 1398 Score = 280 bits (141), Expect = 4e-75 Identities = 215/232 (92%), Gaps = 6/232 (2%) Strand = Plus / Plus Query: 375 ttggcaaacatatattgtcaataaattatcctggcgtttctaac-ttatacataaatcta 433 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 1 ttggcaaacatatattgtcaataaattatcctggcgtttctaaccttatacataaatcta 60 Query: 434 gcgattcacaattcattatatagaatttatgatttgaataaaaacgttacctttcttgaa 493 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 gcgattcacaattcattatatagaatttatgatttgaataaaaacgttacctttcttgaa 120 Query: 494 atcgattttccagagattaccaacactatngtcaagtacttatccttacccgacca-gta 552 |||||||||||||| |||||||||||| ||||||||| |||| || |||| || ||| Sbjct: 121 tccgattttccagagaataccaacactatgttcaagtactcatcc-taaccgagcaggta 179 Query: 553 gtagtgaaagatctacttactttcattaacggttcatttttggtattcagga 604 |||||| ||||||||| ||||||||| | | |||||||||| |||||||||| Sbjct: 180 gtagtg-aagatctacatactttcatcagc-gttcattttt-gtattcagga 228 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 16,157 Number of Sequences: 1807 Number of extensions: 16157 Number of successful extensions: 221 Number of sequences better than 1.0e-20: 1 length of query: 846 length of database: 10,358,551 effective HSP length: 16 effective length of query: 830 effective length of database: 10,329,639 effective search space: 8573600370 effective search space used: 8573600370 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)